SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51580 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621 | SoyBase | E_val: 2.00E-93 | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG2190 | KOG | PolyC-binding proteins alphaCP-1 and related KH domain proteins | JGI | ISS | |
| PTHR10288 | Panther | RNA-BINDING PROTEIN RELATED | JGI | ISS | |
| PTHR10288:SF53 | Panther | KH DOMAIN-CONTAINING PROTEIN | JGI | ISS | |
| PF00013 | PFAM | KH domain | JGI | ISS | |
| UniRef100_G7J415 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Poly(RC)-binding protein n=1 Tax=Medicago truncatula RepID=G7J415_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A4A0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A4A0 related cluster n=1 Tax=unknown RepID=UPI000233A4A0 | SoyBase | E_val: 0 | ISS |
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Glyma06g09461 not represented in the dataset |
Glyma06g09461 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g09300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g090100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g09461.2 sequence type=transcript gene model=Glyma06g09461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCGCAAAACATTTTGACTTGAGCTTCATTATCTCACCACCCCATCCTTCCCCTATTTCTTCATCATTTAAAGTATATAATTAATATAAGCCCAAAATGGCCCAATTGATCGTTTAAGTGTAACCCTAAATCACTTTGCTATATATAGACGCAGTGCCACAAACATCTTGACTTGTAAATTTCATTATCTCACCGCTCCCTCCCTCCTTTCTTTCTTCCGTTCATGTTCTTGTCTTTTCAGCTATGAAAGACATAACACAATGCACATCTGGTTGTTACACTGCATAATTCTCTGCCAGCACCATTTCCGTCGTTCTCCGCCCTTCATCGTCGACACCGTGCGATTCCCGAAGTTCCAATGACGTCTTCTAAGAGGCCTAATGCGGGGCCGAATGGGAGAGGGAAACGCCGGAGATCTTCTGGCGGTTTTTCGTCGTTGGGTGTTTCTCCGGGGAGCGTTGTGTTCCGTTTGCTCTGTCATGCTTCTAGAATTGGCGGTGTTATTGGCAAAGGTGGTTCCATCATATCGCAAATTCGCCAAGAAACTGGCGTGAAACTTAGGATCGAGGAAGCTGTTCCCGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGAAAAAGAGACTGAAGAAGATAACACTGAACAGGGAAAGGAGGTTAATGATAATGATGATGGTGGAAGCGAGGGGAAGGATCGGGAGGAGAAGGATGATGGCGATGGTAATGAAGATAAAAGAGAAAAAGATGCCGTTCCCGTTGAAGATTCAAAGAGCGAGAAGGGGAATTCGGCTATTTGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGAGACAACTGAAGGAGATGAAGAAAGTAATAAACCTTCTTCCTTTTTTTTGAGGCTACTTATTCTTACTGCTCAAGTTGGTTGTGTTCTAGGAAAGGGTGGTAGTGTGATAAAGAGAATGGCAGCTGAGAGTGGTGCACAGATTCGGATCCTTCCTAAAGACAAGCTTCCAGCGTGTGCATCGGCTTCTGATGAGATAGTTCAGATCTCAGGAAGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAACTTTTGGAAAATCCGCCTCGGGATCATGATTCCCTGTCCGCCAAGTCTACTGGGCCGTCGTCTCATTCATTTGGGCAATTCCCACCACACAACCGTTCTTTTTCTGCTCAAGGAGAACCTTTTGCTAGTGGTCCTCATGATATTTCTGCTTTTCATTCTGCCGCTCCTCTGATTCCCAAGTTTCATGAAGCTGCCATCCACGGTCGCATGAGGCCTTTACAAGAAATGCTTACTTTTCGTTTATTGTGTCCTGCGGAGAGGGTAGGAAATATAATTGGCAAAGGTGGAGCAATCATAAAGACCGTGCAGCAAGAGACAGCAAGTGAGATCAAGGTTTTAGAAGCCCCTCCAGATTCAGAGGACTGTGTTATTGTTATATCTGGTCCAGCGCACCCAGAGGATAGAATATCCCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGCCTATACCTGATGCCAAAGACCATATTATGTTAGCAAGGTTTCTGGTTTCTTCCACTCAAATAGGTTGTCTTCTTGGCAAGGGTGGTTCCATCATTACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAGGATGAAGAAGTAATTCAGGTGAATGGAGAAATTGAGGCAGTGCATGATGCTCTCTTGCAAATAACCACTAGATTAAAACATCATTGCTTTCGCGATTCATATCCATCTGTCAATTATCCTTCAAATTCTCCATTTCTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGAAGGGGACTTTCACCTCCTAGGATGTATTCTGACCTTGGTCATCCACATCCACACGCGGGCTTTCCTCTTGATGATCGCCCTCCTTTCTTGAATAGTATACATAGACCAGGCCTTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCACAGGGGATACTTGAAGGTGGCATACCCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCAGTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTAAAACAAATACTTCAGATTTCTGATGCAAACATTACTATTACTGATCCAAAGCCTGGAACTGTGGAAACTAAAATTATAATATCTGGAACCCCTGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCAGTTTGATCACTCTATTTGGGTAATACACTAATACATTTGTTTCTTTAGTCTGGCAGTTGTAATTGAGTTTTTTTTGCTTAATTTTCTCCGCGTTGCAATTTTTTGTAGGCATGTGGTATAAATTGTAAAATGTTATCCTATAGAAATACCACTACACCCCAGCTTTGCTTTTATGTGCATTTATTTGGTATGCTTTTATACATCCCTATGTTTGATAGATTTTCATTGTGTCCGAGATCAGTACTGTTTTGAGGCTTGTAGAAGATAAACAGTCAAAAGGGCTTCCAACGTCTCTTGTATCTTTAACTCAAGCAAGTTGGTGTATGCTTTACTCCTCTTCTTTGAGATGTAAGAATATTAATCATCTGGTTCTTCCTTGCATCTGTGCTTTTATCATTGGGCTTGTAAGACCCTGTCTGTCCCCAAAAAAAATGCCAAAAGAAAGAGAAAAGACAATAGCATGTGCTCTGCTCTAGAAAGAAAGAAGATAATGGAAAGAGCATTTCCTCTGCTGTATGTACTATGTTCAAGTACTAGATGATCCTAAGGCCATCTCCATCTAGAAGTGCTTAAATTCCCTTCTCTTATTAAGAACCAATCCTTAGTAAGATCATTTTATCTTATTGAGAACATGTAATGCTAATGCACCAGGTGCTTAACTTTTTTTTTTTAGGGGTCATATAATATACTTTTTATGAAAAACAATTAAAAAAGTTGGTAATAGTAAATTTTTTTAAGTTGATGGGTTGGAAAGAATAGTTGTTTAAGTTGTAAAACGTAAAAATAAGTGATGTGTAATAATGATGGAACCCAGTTAAATGTGTAAAAAGTAAAAAAGAGATGCAGGGATGAAAATACTCAAATTTACTAAATAAACTGATAGAATTGGTATCATAACAGCAATAAGGAATTTTTTATTGAATGGAATTAGGAAGCCCCCTAGGAATATGCTCCAGATATTTCGAGGTCTAGATCCGCTCCTTGCACTGTTTCACAATCACCAAAAGTTTCCTTAACTGTTTACGATTATTCCTATTTATAGGCTGATCTACTAGCATAAACCCACTCTAGTTGGGCCTAATCAGTTGCAGGCCCAGTCCCTTTCTAACACAAACCATTGTGTTTCTTTGGCCAATTAATCTAACTAATTTTTAATTCATAATTAATCCAACTAATTACTAACATAATGGGTATCTATCATAAGCCTGAACGCACCATA
>Glyma06g09461.1 sequence type=CDS gene model=Glyma06g09461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGTCTTCTAAGAGGCCTAATGCGGGGCCGAATGGGAGAGGGAAACGCCGGAGATCTTCTGGCGGTTTTTCGTCGTTGGGTGTTTCTCCGGGGAGCGTTGTGTTCCGTTTGCTCTGTCATGCTTCTAGAATTGGCGGTGTTATTGGCAAAGGTGGTTCCATCATATCGCAAATTCGCCAAGAAACTGGCGTGAAACTTAGGATCGAGGAAGCTGTTCCCGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGAAAAAGAGACTGAAGAAGATAACACTGAACAGGGAAAGGAGGTTAATGATAATGATGATGGTGGAAGCGAGGGGAAGGATCGGGAGGAGAAGGATGATGGCGATGGTAATGAAGATAAAAGAGAAAAAGATGCCGTTCCCGTTGAAGATTCAAAGAGCGAGAAGGGGAATTCGGCTATTTGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGAGACAACTGAAGGAGATGAAGAAAGTAATAAACCTTCTTCCTTTTTTTTGAGGCTACTTATTCTTACTGCTCAAGTTGGTTGTGTTCTAGGAAAGGGTGGTAGTGTGATAAAGAGAATGGCAGCTGAGAGTGGTGCACAGATTCGGATCCTTCCTAAAGACAAGCTTCCAGCGTGTGCATCGGCTTCTGATGAGATAGTTCAGATCTCAGGAAGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAACTTTTGGAAAATCCGCCTCGGGATCATGATTCCCTGTCCGCCAAGTCTACTGGGCCGTCGTCTCATTCATTTGGGCAATTCCCACCACACAACCGTTCTTTTTCTGCTCAAGGAGAACCTTTTGCTAGTGGTCCTCATGATATTTCTGCTTTTCATTCTGCCGCTCCTCTGATTCCCAAGTTTCATGAAGCTGCCATCCACGGTCGCATGAGGCCTTTACAAGAAATGCTTACTTTTCGTTTATTGTGTCCTGCGGAGAGGGTAGGAAATATAATTGGCAAAGGTGGAGCAATCATAAAGACCGTGCAGCAAGAGACAGCAAGTGAGATCAAGGTTTTAGAAGCCCCTCCAGATTCAGAGGACTGTGTTATTGTTATATCTGGTCCAGCGCACCCAGAGGATAGAATATCCCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGCCTATACCTGATGCCAAAGACCATATTATGTTAGCAAGGTTTCTGGTTTCTTCCACTCAAATAGGTTGTCTTCTTGGCAAGGGTGGTTCCATCATTACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAGGATGAAGAAGTAATTCAGGTGAATGGAGAAATTGAGGCAGTGCATGATGCTCTCTTGCAAATAACCACTAGATTAAAACATCATTGCTTTCGCGATTCATATCCATCTGTCAATTATCCTTCAAATTCTCCATTTCTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGAAGGGGACTTTCACCTCCTAGGATGTATTCTGACCTTGGTCATCCACATCCACACGCGGGCTTTCCTCTTGATGATCGCCCTCCTTTCTTGAATAGTATACATAGACCAGGCCTTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCACAGGGGATACTTGAAGGTGGCATACCCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCAGTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTAAAACAAATACTTCAGATTTCTGATGCAAACATTACTATTACTGATCCAAAGCCTGGAACTGTGGAAACTAAAATTATAATATCTGGAACCCCTGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCAGTTTGA >Glyma06g09461.2 sequence type=CDS gene model=Glyma06g09461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGTCTTCTAAGAGGCCTAATGCGGGGCCGAATGGGAGAGGGAAACGCCGGAGATCTTCTGGCGGTTTTTCGTCGTTGGGTGTTTCTCCGGGGAGCGTTGTGTTCCGTTTGCTCTGTCATGCTTCTAGAATTGGCGGTGTTATTGGCAAAGGTGGTTCCATCATATCGCAAATTCGCCAAGAAACTGGCGTGAAACTTAGGATCGAGGAAGCTGTTCCCGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGAAAAAGAGACTGAAGAAGATAACACTGAACAGGGAAAGGAGGTTAATGATAATGATGATGGTGGAAGCGAGGGGAAGGATCGGGAGGAGAAGGATGATGGCGATGGTAATGAAGATAAAAGAGAAAAAGATGCCGTTCCCGTTGAAGATTCAAAGAGCGAGAAGGGGAATTCGGCTATTTGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGAGACAACTGAAGGAGATGAAGAAAGTAATAAACCTTCTTCCTTTTTTTTGAGGCTACTTATTCTTACTGCTCAAGTTGGTTGTGTTCTAGGAAAGGGTGGTAGTGTGATAAAGAGAATGGCAGCTGAGAGTGGTGCACAGATTCGGATCCTTCCTAAAGACAAGCTTCCAGCGTGTGCATCGGCTTCTGATGAGATAGTTCAGATCTCAGGAAGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAACTTTTGGAAAATCCGCCTCGGGATCATGATTCCCTGTCCGCCAAGTCTACTGGGCCGTCGTCTCATTCATTTGGGCAATTCCCACCACACAACCGTTCTTTTTCTGCTCAAGGAGAACCTTTTGCTAGTGGTCCTCATGATATTTCTGCTTTTCATTCTGCCGCTCCTCTGATTCCCAAGTTTCATGAAGCTGCCATCCACGGTCGCATGAGGCCTTTACAAGAAATGCTTACTTTTCGTTTATTGTGTCCTGCGGAGAGGGTAGGAAATATAATTGGCAAAGGTGGAGCAATCATAAAGACCGTGCAGCAAGAGACAGCAAGTGAGATCAAGGTTTTAGAAGCCCCTCCAGATTCAGAGGACTGTGTTATTGTTATATCTGGTCCAGCGCACCCAGAGGATAGAATATCCCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGCCTATACCTGATGCCAAAGACCATATTATGTTAGCAAGGTTTCTGGTTTCTTCCACTCAAATAGGTTGTCTTCTTGGCAAGGGTGGTTCCATCATTACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAGGATGAAGAAGTAATTCAGGTGAATGGAGAAATTGAGGCAGTGCATGATGCTCTCTTGCAAATAACCACTAGATTAAAACATCATTGCTTTCGCGATTCATATCCATCTGTCAATTATCCTTCAAATTCTCCATTTCTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGAAGGGGACTTTCACCTCCTAGGATGTATTCTGACCTTGGTCATCCACATCCACACGCGGGCTTTCCTCTTGATGATCGCCCTCCTTTCTTGAATAGTATACATAGACCAGGCCTTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCACAGGGGATACTTGAAGGTGGCATACCCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCAGTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTAAAACAAATACTTCAGATTTCTGATGCAAACATTACTATTACTGATCCAAAGCCTGGAACTGTGGAAACTAAAATTATAATATCTGGAACCCCTGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCAGTTTGA
>Glyma06g09461.1 sequence type=predicted peptide gene model=Glyma06g09461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSSKRPNAGPNGRGKRRRSSGGFSSLGVSPGSVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLRIEEAVPGCDERVITISGSEKETEEDNTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKREKDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKPSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASASDEIVQISGSVEVVRKALQSVSQQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNRSFSAQGEPFASGPHDISAFHSAAPLIPKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDCVIVISGPAHPEDRISPVQEAVFRVQTRIAKPIPDAKDHIMLARFLVSSTQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDSYPSVNYPSNSPFLDQLPPFPPYLGRRGLSPPRMYSDLGHPHPHAGFPLDDRPPFLNSIHRPGLPPHISERKPWGPQGILEGGIPIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPVIYGEDGECLKQILQISDANITITDPKPGTVETKIIISGTPEQTHAAQSLIQAFVMSERESV* >Glyma06g09461.2 sequence type=predicted peptide gene model=Glyma06g09461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSSKRPNAGPNGRGKRRRSSGGFSSLGVSPGSVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLRIEEAVPGCDERVITISGSEKETEEDNTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKREKDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKPSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASASDEIVQISGSVEVVRKALQSVSQQLLENPPRDHDSLSAKSTGPSSHSFGQFPPHNRSFSAQGEPFASGPHDISAFHSAAPLIPKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDCVIVISGPAHPEDRISPVQEAVFRVQTRIAKPIPDAKDHIMLARFLVSSTQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDSYPSVNYPSNSPFLDQLPPFPPYLGRRGLSPPRMYSDLGHPHPHAGFPLDDRPPFLNSIHRPGLPPHISERKPWGPQGILEGGIPIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPVIYGEDGECLKQILQISDANITITDPKPGTVETKIIISGTPEQTHAAQSLIQAFVMSERESV*
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