Glyma06g09350 - SoyBase

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Report for Sequence Feature Glyma06g09350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6881525
stop:	6893283
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32820	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15831679-15841454 REVERSE LENGTH=1863	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR15502	Panther	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	JGI		ISS
PTHR15502:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_F4JV59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JV59_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A49D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A49D related cluster n=1 Tax=unknown RepID=UPI000233A49D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09350

Paralog	Evidence	Comments
Glyma04g09220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g088900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09350

Limit To All Plant Sequences

>Glyma06g09350.1   sequence type=CDS   gene model=Glyma06g09350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCAATTGCAGCTATAAATGACACTGACTCGAAATGTCAGTGGGAACCCCTAGCTCCCACGAAAGAAGCACAGGAATTTCATCTTTCTCAAACTTATCACGAAGGGCTTCTCAAGTTACAAACAAAAGAGTATGAGATGGCTCGTGAGCTCTTAGAATCTGTCCTTAAAGATCCTCTTATTGCTAATGCTCAGGTGGATAGCAGTGCCAGTGATGGTCATCTATTGCAACTCAGATTTTTGGCATTGAAAAACCTTGCCACTGTTTTTCTCCAGCAAGACTCTACACATTATGAGAATGCTCTACGCTGTTACCTTCAAGCTGTGGAGATTGATTCTAAAGATTCTGTTGTCTGGAACCGGCTGGGAACACTGTCATGCTCAATGGGCTCACTGAGTATTTCACGTTGGGCATTTGAGCAAGGCCTCTTGTGTAGCCCTAATAACTGGAATTGCATGGAGAAGCTTTTGGAAGTTCTTATTGCAATTGGTGATGAGGTTGCTTGCCTTTCTGTCGCTAAATTGATTTTGAGGCACTGGCCATCACATTCTCGTGCTTTGCATGTTAGAAATACCATCGAAGAATCAGAACCTTTGCCATTTGCTCCAAGAGGCATAGACAAATTGGAACCTCAACATGTGCGGCTCAAATTTCCTGACAAGAGGAAAGCTACTAATGAGAATGTAGATGAGGATGTTGCATTCAAAAAGCTGAACCAGAATAAAGCACTGCACCTGACAGAAGTTTCCTGGGTGGCTCTTGCCGACGCACTTCTGGAAATCTTATCACCACAAAGTTCCGAGATGGATCCTCAAAAAGCATTCAGTTCTCCTGATATTAGGCTAAGCATAATCTTACCTAATAGCTCAGAAGCTGTTATGGACACTGTGGAAATGAAAGGGTCCAATGGTGAAAATAGTGTTTCTGGTGATGGTAACATACAACAATTAAGTGCTTTTAAAGAGAAAGAAGCAAATATCCAAGAAGAACAACTGCATGAAAGGCGAAGTTCTCGACTTGAAAGGCTCCGGAGTCGTAAACCAGGGAAAGAGGAATCCAATTCTTCTTGTGGAAAGGACCCTACCAAGGTTGTCATTCAATATCTAGAGCCATTTATTTCTGGTGGATTGGGGGGTCAAGATACAATTGATAGAGATAGGACGACAGTATCCTGTTTAGGAAATTCTGAATATTATAATGTTTCTGCATTTTTAAGAGAAACTTCAAACAATTATGGTGCTTATCATATGGGGCACTTGCTTTTAGAAGAAGTCACAAGACAAGGTCTCACATATCAGGATGCTTTTGTCAAATTTTTGGAGTTGGAAAAGTTGACAAGGCATTGGGGAAAGGAGAGAACTGCCGAATGTAATATTTTTCTTGCTGAACTGTATTATGACTTTGGATCATGCTCCTCCACTGGTTCTCAACAATTAGAATTTATTTCTGAGACGTCTTATCATCTTTGTAAGATCATTGAATCTGTAGCTTTAGATTATCCTTTTCACTTGACTCATGCCTTGAATGAAAATTGTTTTTCGATAGATAGTATCCAAGAGACCAGTGGAAAAACAATAAATACCTCCACTGAGAGCAATTCAAATTTAGACATCTCACTTCTGATGAAAAACAGTCCCCTTTGGTCTCGATTCTTCTGGCTAAGTGGGAGACTGTCTATTGTTGATGGCAACAGGGCAAAAGCATGTGAAGAATATTGTATCGCTTTGACACTTTTGGCGAAGAGAGAAAATGAAGATTCTCTATGTTCAGTCCCCCGCCCACATTGCAAGGTTGTAAAAGAGCTAAACTTTGATAGAGTTCTTGATGAAATTAATATATTAAAGGTCAATTTCTTGATGGAAAAGTCTGTCATTAAGATGATGGAACAAGAAAAGTTTTTGGAGTGTGTATCCCTGCTTTCTCCACTTCTATTCTCCACACAGGATGTCTACCCCAATTCATTCTCTTTATCCAAGACAGATAAAAGTGATGAAAAGATAACTTCCACTGAACTCATGGCTGTAGATGTTCTAATGGAAGCATGTCAAAAGGCGAATCCAATGGATGTAGAGATGTATTTCAATTGTCATTATAGAAAGCTGAAAATACTAATGACAAAGATGGGTTTAAATACATGTATTACATCATTTAAATCTTCTGATCAAGCACCTATTTTAAGTGCGTCTCCTAATTTTGATATTGATTCAAAGGAAAGTTCTAGCAAGAACTGTAGTCACTTGGTTGCGGATGAAGTGAAGGCACTCTCTGACTGTATCTCACAAGTGAAGAAAATTATCGATCAACGTGGAGATTCTGATGGCCTTTTTGTTCCAACAAGAAGCATTTGTCAAATGCAATCTCTGCTGTTGTTAATCATGAGCCATGTTGCCAACATACTTGCCCTCAACAAAGCCTCAGCACAAGTAATTTCTGATCAAGCTGAAAGCAGCTGTTTCGTTGATGCAGCCATTGTTTTCTGCAAACTCCAGCATCTTTGCCCAACAACGCCTATCAAAACTCAAGTTGATTTAATTGTTGCAACACATGACTTGCTTGCTGAATATGGCCTTTGCTGTTTGGGTGAAGGTGGCAAAGGTGAAGAAGGAACATTTCTTAGATTTGCAATAAAACATCTCTTGGCCTTGGATACGAAGCTTAAATCCAGCTTTAACCATAAAGAATCAATGCAATGTGAGGAAGTGTCCAAAAACAGTCTTGTCAATGTGTCTGTTGAAGAATCAAAATCAGACACATTAGACATCCAGATGGATTGCACCAAAATTGATGAAATTAATTCAGAGAAAAAGGATGTTTATGAAGGAATAATATCCAAAGGCATTTCATCTTGCAGAGTTCATGATAAAGACTGTAAGGAAGTAGAGTGTGAAAATCATGGAGGTGCTGGCACTGGCAGTAAGTTAATTAAGGGTGAAAGTTCAATCAATCAATTGATTGAATGTGAAGATGAACTTTCTGAAGATGAATGGGAGGAACTTGAGTCTAAAATTGACTGTGCCTTAGATCAGTGCTTTTTCTGTTTATATGGATTACATCTAAGATCTGATTCATCTTATGAGGATGATCTAGTGGTGCACAAAAACACAAGCCGAGGAGATTATCAAACCAAGGAACAATGTGCTGATGTTTTCAAGTATGTTCTTCCCTATGCAAAGGCATCTTCTAGGACTGGACTGGTCAAACTTCGTAGAGTTTTAAGAGCTATTAGGAAGCACTTTCTGCAGCCACCAGAGGACCTCTTGGCAGGAAACCCTATTGATAAGTTCCTAGATGATCCTAATCTATGTGAAGATAAGCTCTCAGAGGAGGCTGGGTCTGATGGGTTTCTTGAATCTATTACTAAGAGAATGTTTCCTGATGTGGGTGGCCTTGCTCAGTATAATGCAACATTATTGAGGAGGTCTGAGCCATATTTGGAGGTCTACTGTAACTTGTATTATTTCTTGGCTCTGTCTGAGGAAATGAGCGCAACAGATAAGTGGCCTGGATTTGTGCTGACCAAGGAAGGGGAAGAATTTGTTGAACAAAATGCAAAGCTCTTCAAATATGATCTCATGTACAATCCTCTGCGCTTTGAAAGCTGGCAGAGACTTGGAAATATTTATGATGAGGAAGTAGATTTGTTACTAAATGATGGTAGCAAGCACGTTAATGTAGTAGGGTGGAGGAAGAATGCTACTTTATCCGAGAGAGTGGAAACAAGCCGAAGGAGGAGTAGAAGGTGTCTACTAATGAGTTTAGCTTTGGCAAAGACATCTGCTCAGCAGTGTGAGATACATGAGTTATTGGCATTGGTATACTACGACAGTCTTCAAAATGTAGTCCCATTTTATGATCAGAGATCTGCTTTGCCCTTAAAGGATGCGGCATGGATGATGTTTTGTGAGAACTCAATGAAACATTTTAAGAAAGCCTTCACACTTAAGCAAGATTGGTTGCATGCCTTTTACTTGGGTAAACTCAGCGAAAAACTTGGATATTCACACGAAATTGCATTATCATATTACAATAAAGCTATTGCTTGGAACACATCAGCTGTTGATCCTGTCTACAGGATGCATGCCTCACGTTTGAAATTATTATTTAAGTGTGGAAAACAGAATTTGGAGATTTTGAAGGTTCTCTCAGCAAATTCCTTTAATCAATCTGTAAAAGAAGCTGTCACAAGTATCCTTATTGGTATTGATAGCTCATTTTTAAATACAAAGGAAAGATGTATTGATGCCAATTTTGTGGAAACAAAGCATGAAGAGTTGCTCAAATTGGATACAGTATGGTCTATGCTTTTCAATGATTGCCTTTCTGCTCTTGAAACATGCGTAGAGGGGGATCTCAAACATTTCCATAAGGCCAGATACATGCTGGCTCAAGGACTGTACAAAAGAGGTGAGAGTGGTGATATAGAGAGGGCAAAAGATCATCTATCTTTCTGCTTCAAATCTTCACGCTCATCATTTACAATAAATATGTGGGAAATTGATAGCACGGTAAAAAAAGGAAGGCGCAAGACACCAGGTACTGCTGGGAACAAAAAATCCCTTGAGGTTAACTTACCAGAAAGTTCTCGAAAATTTATTACGTGCATTCGGAAGTATTTGCTGTTTTATCTCAAACTATTGGAAGAGACTGGAGATAGATGTATTCTTGAACGTTCGTATGTTGCTCTTCGTGCAGATAAACGGTTTTCATTATGTATTGAAGATCTTATACCCGTGGCTATTGGAAGGTATCTAAAGGCCCTGATTGCAACTATGTGCCATTATCAGACTACTGCCTCTGGTTCAGTGAGCAGTTCTGACAATGTGCTGGAGAGAATGTTTGCATTGTTCATGGAGCAAGGGAGCTTATGGCCAGAAATATGCAGCTTGCCTGAAATTGAAGGCTCAGATATGTCAGAGAGTATCATATATGGATATCTTCATGAACATATTGTATTATTGGAGAAAAATGGAAAACTGGAAACTCTTGAAGCAATAAATGAGAAGATTCGGAAGCGTTCTAAGAACCCAAAGTTCTCAGACAGTAATTATGCCAAAGTTCGCAAGCATGCTTCTGTTGCTTGGTGTCGATCTCTTGTATACAATTTGGCACAAATAACTCCATTATCTTGTGAATTCTCAAATGGGATTCAGGTCCTTAATTTGACTGATGGTGGGATGGATAATAGCCAGTTGCTCTGTATTGATTTGCAGCCAAATGAGTTATGGAGTACAGCTTTTGAAGATCCAACTCATTTAGAAAAGATTGAAACAAAATGGAGCACTATTTTATCAAAAGTAAAAGATATTATTATCAAGAAAGCTTCTGATGAGAATTTGGAAACTGCAAACACTTTGCTCAGAGCTTGCTATAATTTTTACCGGGAGAGTTCTTCTGTAGTGCTTACCTCTGGACTCAACTTTTATTTGATTCCATCTCAATTAGTAACACAGACGCCATTCAACCCAAGTACTGCTGGAATTGAAGCACTTGATCTGAGCATACCAAGGAAGCTTCTCTTGTGGGCCTATGTGCTATCCCATGGACGTTGTGCAAATATCTCAATTGTTGTAAAGCATTGTGAAGAAATGTCGAAGTCAAAGATGAAAAGAGGAAGTGGAATGTCACCTGCGTTATCAAACACATCTCCTGCCCCTAGTTTTCCAGGTAGCGGTAGAAACGGATCAAATTCTGCCGGAAGCATTGACGTTGATTCTGCACATGCCACAACAGTGGGGTCGGTTTCACTTGACATTCAGAAAAATCTCTTTGCTTCTCCCCAGTTGCATCAATGCACTAGTAACGATGCAGAACGAAGCAATTTGATAGCACATGAAGGAGATCCAGAGGGAGATTGA

Predicted protein sequences of Glyma06g09350

Limit To All Plant Sequences

>Glyma06g09350.1   sequence type=predicted peptide   gene model=Glyma06g09350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSIAAINDTDSKCQWEPLAPTKEAQEFHLSQTYHEGLLKLQTKEYEMARELLESVLKDPLIANAQVDSSASDGHLLQLRFLALKNLATVFLQQDSTHYENALRCYLQAVEIDSKDSVVWNRLGTLSCSMGSLSISRWAFEQGLLCSPNNWNCMEKLLEVLIAIGDEVACLSVAKLILRHWPSHSRALHVRNTIEESEPLPFAPRGIDKLEPQHVRLKFPDKRKATNENVDEDVAFKKLNQNKALHLTEVSWVALADALLEILSPQSSEMDPQKAFSSPDIRLSIILPNSSEAVMDTVEMKGSNGENSVSGDGNIQQLSAFKEKEANIQEEQLHERRSSRLERLRSRKPGKEESNSSCGKDPTKVVIQYLEPFISGGLGGQDTIDRDRTTVSCLGNSEYYNVSAFLRETSNNYGAYHMGHLLLEEVTRQGLTYQDAFVKFLELEKLTRHWGKERTAECNIFLAELYYDFGSCSSTGSQQLEFISETSYHLCKIIESVALDYPFHLTHALNENCFSIDSIQETSGKTINTSTESNSNLDISLLMKNSPLWSRFFWLSGRLSIVDGNRAKACEEYCIALTLLAKRENEDSLCSVPRPHCKVVKELNFDRVLDEINILKVNFLMEKSVIKMMEQEKFLECVSLLSPLLFSTQDVYPNSFSLSKTDKSDEKITSTELMAVDVLMEACQKANPMDVEMYFNCHYRKLKILMTKMGLNTCITSFKSSDQAPILSASPNFDIDSKESSSKNCSHLVADEVKALSDCISQVKKIIDQRGDSDGLFVPTRSICQMQSLLLLIMSHVANILALNKASAQVISDQAESSCFVDAAIVFCKLQHLCPTTPIKTQVDLIVATHDLLAEYGLCCLGEGGKGEEGTFLRFAIKHLLALDTKLKSSFNHKESMQCEEVSKNSLVNVSVEESKSDTLDIQMDCTKIDEINSEKKDVYEGIISKGISSCRVHDKDCKEVECENHGGAGTGSKLIKGESSINQLIECEDELSEDEWEELESKIDCALDQCFFCLYGLHLRSDSSYEDDLVVHKNTSRGDYQTKEQCADVFKYVLPYAKASSRTGLVKLRRVLRAIRKHFLQPPEDLLAGNPIDKFLDDPNLCEDKLSEEAGSDGFLESITKRMFPDVGGLAQYNATLLRRSEPYLEVYCNLYYFLALSEEMSATDKWPGFVLTKEGEEFVEQNAKLFKYDLMYNPLRFESWQRLGNIYDEEVDLLLNDGSKHVNVVGWRKNATLSERVETSRRRSRRCLLMSLALAKTSAQQCEIHELLALVYYDSLQNVVPFYDQRSALPLKDAAWMMFCENSMKHFKKAFTLKQDWLHAFYLGKLSEKLGYSHEIALSYYNKAIAWNTSAVDPVYRMHASRLKLLFKCGKQNLEILKVLSANSFNQSVKEAVTSILIGIDSSFLNTKERCIDANFVETKHEELLKLDTVWSMLFNDCLSALETCVEGDLKHFHKARYMLAQGLYKRGESGDIERAKDHLSFCFKSSRSSFTINMWEIDSTVKKGRRKTPGTAGNKKSLEVNLPESSRKFITCIRKYLLFYLKLLEETGDRCILERSYVALRADKRFSLCIEDLIPVAIGRYLKALIATMCHYQTTASGSVSSSDNVLERMFALFMEQGSLWPEICSLPEIEGSDMSESIIYGYLHEHIVLLEKNGKLETLEAINEKIRKRSKNPKFSDSNYAKVRKHASVAWCRSLVYNLAQITPLSCEFSNGIQVLNLTDGGMDNSQLLCIDLQPNELWSTAFEDPTHLEKIETKWSTILSKVKDIIIKKASDENLETANTLLRACYNFYRESSSVVLTSGLNFYLIPSQLVTQTPFNPSTAGIEALDLSIPRKLLLWAYVLSHGRCANISIVVKHCEEMSKSKMKRGSGMSPALSNTSPAPSFPGSGRNGSNSAGSIDVDSAHATTVGSVSLDIQKNLFASPQLHQCTSNDAERSNLIAHEGDPEGD*

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