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Report for Sequence Feature Glyma06g09290

Feature Type:gene_model
Chromosome:Gm06
Start:6846277
stop:6852256
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g09290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25930AT Annotation by Michelle Graham. TAIR10: Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005 SoyBaseE_val: 0ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0052542GO-bp Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF789Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
PF08263PFAM Leucine rich repeat N-terminal domain JGI ISS
UniRef100_G7J3I8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7J3I8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K9H2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K9H2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g09290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09290
ParalogEvidenceComments
Glyma04g09160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g088400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g09290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g09290
>Glyma06g09290.1   sequence type=CDS   gene model=Glyma06g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAAACTACCCCTCTTCATGCTGAAATTTCCTTTTCATTTCCTCTTATTGCTCAGTGTCATAGTACCCTTTCAAGTATTTTCACAATCAGAAAATACCGAACAAACAGTCCTACTCTCCCTCAAACGTGAATTGGGGGACCCACCGTCGCTCCGATCATGGGAACCGTCACCGTCGGCGCCGTGCGACTGGGCGGAGATTCGCTGCGATAACGGCTCCGTCACGAGGCTCCTCCTCTCCCGCAAAAACATCACCACCAACACCAAGAACCTCTCTTCCACAATCTGCAACCTCAAACACCTCTTCAAGCTCGACCTCTCCAGCAACTTCATCTCCGGCGAGTTCCCGACAACGCTGTACAACTGCTCCGACCTCCGGCACCTCGACCTGTCGGACAACTACCTCGCCGGACAAATTCCCGCCGACGTCGACCGCCTCAAAACGCTCACTCACCTTAACCTCGGCAGCAACTACTTCTCCGGCGAGATCATGCCGTCGATCGGAAACCTGCCGGAGCTGCAAACTCTCCTCCTCTACAAAAACAACTTCAACGGAACCATCCGCGGGGAAATCGGAAACTTGTCCAATCTCGAAATCTTGGGTTTGGCTTATAACCCAAAGCTCAAAGGCGCGAAAATCCCGTTGGAGTTTGCCAAGTTAAGAAAACTGAGGATCATGTGGATGACGCAGTGTAACTTGATCGGAGAGATTCCAGAATATTTCGGGAATATTCTCACGAATCTGGAACGGTTGGATTTGTCGAGGAACAATCTAACAGGGAGCATTCCTCGGAGTTTGTTCTCGCTGAAGAAGTTGAAGTTCTTATACTTGTACTATAACAGTTTGTCGGGTGTAATACCTAGTCCTACGATGCAGGGTTTGAATTTAACCGAACTTGATTTCTCTAAGAACAATTTGACGGGTTCCATACCCGGAGAGCTTGGAAACTTGAAGAGTTTGGTTACCTTGCACTTGTATTCGAATTACTTGTCTGGTGAGATTCCAACAAGTTTAAGCCTACTTCCTAGTCTTGAGTATTTCAGGGTTTTCAACAATGGTTTGAGTGGAACACTGCCTCCAGATCTAGGCTTGCATTCGAGGATTGTTGCGGTTGAGGTTTCAGAGAATCATCTCAGTGGTGAGTTGCCGCAGCATTTGTGTGCAAGTGGTGCTCTCATTGGTTTTGTTGCTTTTTCTAACAATTTTAGCGGGGTTTTGCCTCAATGGATTGGGAATTGTCCTTCTCTCGACACGATTCAGGTTTTTAATAATAATTTCTCTGGGGAGGTACCTTTGGGTTTGTGGACTTCGAGGAACATTTCCTCCTTGGTTCTGAGCAACAACTCCTTTTCTGGGCCTCTTCCGAGTAAAGTATTTTGGAATACAAAAAGGATTGAGATAGCGAACAACAAGTTCTCCGGAAGGATATCTATTGGGATTACTTCGGCGGCAAATTTGGTGTATTTTGATGCGAGAAACAACATGCTTTCCGGTGAAATTCCGAGGGAATTGACGCATCTTTCTCAACTTAGTACTCTCATGCTTGATGGTAACCAACTTTCTGGTGCCCTTCCATCTGAGATTATTTCATGGAAATCACTGAGTACTATGACACTCTCAAGAAACAAACTCTCTGGCAAAATCCCTATTGCTATGACCGCTCTTCCTAGCTTGGCTTACTTGGACTTGTCCCAAAATGACATATCAGGTGAAATCCCACCTCAGTTTGATAGATTGAGGTTTGTTTTTCTCAACTTGTCTTCCAACCAAATATATGGGAAAATCTCTGATGAGTTTAATAACCACGCATTTGAAAACAGTTTCTTGAACAATCCTCATCTGTGTGCTTACAATCCAAACGTCAACCTTCCTAACTGCTTGACCAAAACCATGCCACACTCTAGCAATTCATCTTCAAAATCACTTGCCCTGATTTTGGTTGTCATCATCGTTGTGTTGTTGACCATAGCCTCCTTGGTCTTCTATATGTTGAAAACGCAATGGGGCAAACGGCACTGCAAGCATAATAAGATTGAAACGTGGAGGGTCACCTCATTCCAGAGGCTTGATCTCACGGAAATAAATTTCCTCTCAAGTTTGACAGACAATAACCTCATAGGAAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTTCAAATCGTCCAGGTGAGTATTTTGCGGTGAAGAAGATTTGGAATCGCAAGGATATGGATGGCAAGTTGGAGAAAGAGTTTATGGCTGAGGTTGAGATCCTGGGTAATATTCGGCACTCGAATATAGTGAAGCTTTTGTGTTGTTATGCTAGTGAAGACTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCATGGAAAGAAGAAAACGTCACCTTCTAGGTTGAGTTGGCCAACGAGGTTGAATATTGCCATTGGGACTGCACAAGGTCTGTGTTACATGCACCATGATTGCTCACCCCCGGTCATCCACCGAGATGTCAAGTCTAGCAATATACTGTTGGACTCAGAGTTCAGAGCTAAAATAGCAGATTTTGGTCTCGCCAAGATGTTGGCAAAGCTTGGTGAACCACACACCATGTCTGCTCTAGCAGGCTCTTTTGGCTACATTCCACCAGAATACGCCTACTCAACAAAGATTAACGAGAAGGTTGATGTATATAGCTTTGGGGTTGTGCTCTTAGAACTTGTGACAGGAAGAAATCCTAATAAAGCAGGCGACCATGCATGCAGCCTAGTTGAATGGGCGTGGGAGCATTTTAGTGAAGGGAAGAGCATTACTGATGCATTCGACGAGGATATCAAAGATCCATGTTATGCAGAACAGATGACGAGTGTCTTCAAATTAGCTCTCCTTTGCACAAGCTCGTTGCCCTCAACTAGGCCTTCCACGAAGGAGATTTTGCAAGTTCTTCATCGGTGTTGCCATTCAGGTTCTACACGTAGAAGAGTGGGAAACGAATTTAATATCACCCCTCTTCTTGGTGATACAAGGTACATCTATAGTTACAAGGAGAGTAATGCTGCAAGCAATAACTCATCTTGGTGA
Predicted protein sequences of Glyma06g09290
>Glyma06g09290.1   sequence type=predicted peptide   gene model=Glyma06g09290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKLPLFMLKFPFHFLLLLSVIVPFQVFSQSENTEQTVLLSLKRELGDPPSLRSWEPSPSAPCDWAEIRCDNGSVTRLLLSRKNITTNTKNLSSTICNLKHLFKLDLSSNFISGEFPTTLYNCSDLRHLDLSDNYLAGQIPADVDRLKTLTHLNLGSNYFSGEIMPSIGNLPELQTLLLYKNNFNGTIRGEIGNLSNLEILGLAYNPKLKGAKIPLEFAKLRKLRIMWMTQCNLIGEIPEYFGNILTNLERLDLSRNNLTGSIPRSLFSLKKLKFLYLYYNSLSGVIPSPTMQGLNLTELDFSKNNLTGSIPGELGNLKSLVTLHLYSNYLSGEIPTSLSLLPSLEYFRVFNNGLSGTLPPDLGLHSRIVAVEVSENHLSGELPQHLCASGALIGFVAFSNNFSGVLPQWIGNCPSLDTIQVFNNNFSGEVPLGLWTSRNISSLVLSNNSFSGPLPSKVFWNTKRIEIANNKFSGRISIGITSAANLVYFDARNNMLSGEIPRELTHLSQLSTLMLDGNQLSGALPSEIISWKSLSTMTLSRNKLSGKIPIAMTALPSLAYLDLSQNDISGEIPPQFDRLRFVFLNLSSNQIYGKISDEFNNHAFENSFLNNPHLCAYNPNVNLPNCLTKTMPHSSNSSSKSLALILVVIIVVLLTIASLVFYMLKTQWGKRHCKHNKIETWRVTSFQRLDLTEINFLSSLTDNNLIGSGGFGKVYRIASNRPGEYFAVKKIWNRKDMDGKLEKEFMAEVEILGNIRHSNIVKLLCCYASEDSKLLVYEYMENQSLDKWLHGKKKTSPSRLSWPTRLNIAIGTAQGLCYMHHDCSPPVIHRDVKSSNILLDSEFRAKIADFGLAKMLAKLGEPHTMSALAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRNPNKAGDHACSLVEWAWEHFSEGKSITDAFDEDIKDPCYAEQMTSVFKLALLCTSSLPSTRPSTKEILQVLHRCCHSGSTRRRVGNEFNITPLLGDTRYIYSYKESNAASNNSSW*






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