Glyma06g09280 - SoyBase

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Report for Sequence Feature Glyma06g09280

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6833566
stop:	6840933
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10010	AT	Annotation by Michelle Graham. TAIR10: amino acid permease 8 \| chr1:3265976-3268726 FORWARD LENGTH=475	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
KOG1305	KOG	Amino acid transporter protein	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7I270	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease n=1 Tax=Medicago truncatula RepID=G7I270_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUY3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JUY3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09280

Paralog	Evidence	Comments
Glyma04g09150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g088300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09280

Limit To All Plant Sequences

>Glyma06g09280.3   sequence type=transcript   gene model=Glyma06g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGAAAAAGGGTGCCAGAGATGAGCATTATTTGGATACACAAGGACAGTCGGATAAGGGGGAAGCGAGCAATACTCTCGAATGTCACAGATAAGCATTCTGCTACACATAACCAACACTGCCTTCTCGTTTGAGCATTATATAAACTCAGTCGGTGCTCATAACTTTTCCTCACACGACTCTGCTCACTCATATTTATATTGAACAAACAGAGATCCCAAATCAATGGATATTGAAGCAGGTAAAGATATTCCTGTAAGAGACCCAGCGCTACTCGATGACGACGGCAGAATCAAAAGAACCGGGAACGTGTTCACTGCTACCACGCACATAGTAACGGTGGTGGTGGGTGCAGGAGTGCTGGCTCTGGCATGGGCCATGGCTCAGCTTGGATGGATAGCTGGCATAGCCGTTATGATCCTCTTTGCATGCATTTCTGTTTACACTTACAATCTTGTAGCTGATTGCTACAGATTTCCTGACCCAGTCAGTGGCAAGAGAAACTACACTTACATGCAGGCCGTTGATGCCTACCTTGGTGGAAAAATGCACGTGTTCTGCGGATCCGTCCTATATGGGAAGCTCGCCGGGGTTACAGTGGGCTACACTATAACTAGTTCTGTGAGCTTGGTGGCTATAAAGAAAGCTATTTGCTTTCACAAAAAAGGCCATGATGCTTATTGCAAGTTTTCAAACAATCCCTATATGATTGGTTTTGGGATTTGCCAAATTTTATTGTCTCAAATCCCAAATTTCCACAAGTTAACGTGGCTTTCAACCATTGCTGCTGCTACCTCTTTCGGTTATGCATTCATTGGAAGCGGGCTTTCTCTTTCGGTGGTGGTCTCAGGTAAAGGAGAAGCAACCAGTATATTTGGAAGCAAAGTAGGACCAGATTTATCTGAAGCGGATAAAGTTTGGAAGGTTTTCAGTGCTTTGGGAAACATTGCACTTGCTTGCTCATTTGCTACTGTTATTTATGACATAATGGATACATTGAAGTCCTATCCACCAGAAAACAAACAGATGAAAAAGGCCAATATGTTAGGAATCACAACAATGACAATACTTTTCCTGCTATGCGGTGGCCTTGGCTATGCTGCTTTCGGAGATGACACGCCGGGGAACATCCTCACCGGCTTTGGATTTTACGAGCCATTCTGGTTGGTCGCCCTTGGCAATGTTTTCATTGTAGTCCACATGGTTGGAGCATATCAGGTTAGATCCTTTTATTCATGAAATTCAATTTCTCTTCTTCCATCTCCCTCTCTATATAAATAAATGTATTAGAAGACAATTTCTCTTAAGAGAAGATAAGATAATTCTAAATCTTCCTATATAGCA

Coding sequences of Glyma06g09280

Limit To All Plant Sequences

>Glyma06g09280.2   sequence type=CDS   gene model=Glyma06g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGAAGCAGGTAAAGATATTCCTGTAAGAGACCCAGCGCTACTCGATGACGACGGCAGAATCAAAAGAACCGGGAACGTGTTCACTGCTACCACGCACATAGTAACGGTGGTGGTGGGTGCAGGAGTGCTGGCTCTGGCATGGGCCATGGCTCAGCTTGGATGGATAGCTGGCATAGCCGTTATGATCCTCTTTGCATGCATTTCTGTTTACACTTACAATCTTGTAGCTGATTGCTACAGATTTCCTGACCCAGTCAGTGGCAAGAGAAACTACACTTACATGCAGGCCGTTGATGCCTACCTTGGTGGAAAAATGCACGTGTTCTGCGGATCCGTCCTATATGGGAAGCTCGCCGGGGTTACAGTGGGCTACACTATAACTAGTTCTGTGAGCTTGGTGGCTATAAAGAAAGCTATTTGCTTTCACAAAAAAGGCCATGATGCTTATTGCAAGTTTTCAAACAATCCCTATATGATTGGTTTTGGGATTTGCCAAATTTTATTGTCTCAAATCCCAAATTTCCACAAGTTAACGTGGCTTTCAACCATTGCTGCTGCTACCTCTTTCGGTTATGCATTCATTGGAAGCGGGCTTTCTCTTTCGGTGGTGGTCTCAGGTAAAGGAGAAGCAACCAGTATATTTGGAAGCAAAGTAGGACCAGATTTATCTGAAGCGGATAAAGTTTGGAAGGTTTTCAGTGCTTTGGGAAACATTGCACTTGCTTGCTCATTTGCTACTGTTATTTATGACATAATGGATACATTGAAGTCCTATCCACCAGAAAACAAACAGATGAAAAAGGCCAATATGTTAGGAATCACAACAATGACAATACTTTTCCTGCTATGCGGTGGCCTTGGCTATGCTGCTTTCGGAGATGACACGCCGGGGAACATCCTCACCGGCTTTGGATTTTACGAGCCATTCTGGTTGGTCGCCCTTGGCAATGTTTTCATTGTAGTCCACATGGTTGGAGCATATCAGGTGATGGCTCAACCACTATTTCGTGTAATTGAGATGGGTGCTAACATGGCGTGGCCGCGTTCAGATTTCATTAACAAGAGCTATCCCATCAAAATGGGCTCCTTAACATGTAACATCAACTTGTTTAGGATAATTTGGAGGTCAATGTATGTGGCAGTGGCCACAGTTATTGCCATGGCTATGCCATTTTTCAATGAGTTTCTTGCCTTGCTTGGAGCAATAGGGTTTTGGCCTCTCATTGTCTTCTTCCCTGTACAAATGCACATTGCACAGAAACGGGTAAAAAGACTATCATTGAAGTGGTGTTGTCTTCAAATATTGAGCTTCGCGTGCTTCCTAGTTACAGTTTCCGCGGCAGTTGGTTCGGTTCGTGGAATTAGCAAGAATATAAAAAAATACAAACTTTTCCAGTATAAACAATAG

>Glyma06g09280.3   sequence type=CDS   gene model=Glyma06g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATTGAAGCAGGTAAAGATATTCCTGTAAGAGACCCAGCGCTACTCGATGACGACGGCAGAATCAAAAGAACCGGGAACGTGTTCACTGCTACCACGCACATAGTAACGGTGGTGGTGGGTGCAGGAGTGCTGGCTCTGGCATGGGCCATGGCTCAGCTTGGATGGATAGCTGGCATAGCCGTTATGATCCTCTTTGCATGCATTTCTGTTTACACTTACAATCTTGTAGCTGATTGCTACAGATTTCCTGACCCAGTCAGTGGCAAGAGAAACTACACTTACATGCAGGCCGTTGATGCCTACCTTGGTGGAAAAATGCACGTGTTCTGCGGATCCGTCCTATATGGGAAGCTCGCCGGGGTTACAGTGGGCTACACTATAACTAGTTCTGTGAGCTTGGTGGCTATAAAGAAAGCTATTTGCTTTCACAAAAAAGGCCATGATGCTTATTGCAAGTTTTCAAACAATCCCTATATGATTGGTTTTGGGATTTGCCAAATTTTATTGTCTCAAATCCCAAATTTCCACAAGTTAACGTGGCTTTCAACCATTGCTGCTGCTACCTCTTTCGGTTATGCATTCATTGGAAGCGGGCTTTCTCTTTCGGTGGTGGTCTCAGGTAAAGGAGAAGCAACCAGTATATTTGGAAGCAAAGTAGGACCAGATTTATCTGAAGCGGATAAAGTTTGGAAGGTTTTCAGTGCTTTGGGAAACATTGCACTTGCTTGCTCATTTGCTACTGTTATTTATGACATAATGGATACATTGAAGTCCTATCCACCAGAAAACAAACAGATGAAAAAGGCCAATATGTTAGGAATCACAACAATGACAATACTTTTCCTGCTATGCGGTGGCCTTGGCTATGCTGCTTTCGGAGATGACACGCCGGGGAACATCCTCACCGGCTTTGGATTTTACGAGCCATTCTGGTTGGTCGCCCTTGGCAATGTTTTCATTGTAGTCCACATGGTTGGAGCATATCAGGTTAGATCCTTTTATTCATGA

Predicted protein sequences of Glyma06g09280

Limit To All Plant Sequences

>Glyma06g09280.2   sequence type=predicted peptide   gene model=Glyma06g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIEAGKDIPVRDPALLDDDGRIKRTGNVFTATTHIVTVVVGAGVLALAWAMAQLGWIAGIAVMILFACISVYTYNLVADCYRFPDPVSGKRNYTYMQAVDAYLGGKMHVFCGSVLYGKLAGVTVGYTITSSVSLVAIKKAICFHKKGHDAYCKFSNNPYMIGFGICQILLSQIPNFHKLTWLSTIAAATSFGYAFIGSGLSLSVVVSGKGEATSIFGSKVGPDLSEADKVWKVFSALGNIALACSFATVIYDIMDTLKSYPPENKQMKKANMLGITTMTILFLLCGGLGYAAFGDDTPGNILTGFGFYEPFWLVALGNVFIVVHMVGAYQVMAQPLFRVIEMGANMAWPRSDFINKSYPIKMGSLTCNINLFRIIWRSMYVAVATVIAMAMPFFNEFLALLGAIGFWPLIVFFPVQMHIAQKRVKRLSLKWCCLQILSFACFLVTVSAAVGSVRGISKNIKKYKLFQYKQ*

>Glyma06g09280.3   sequence type=predicted peptide   gene model=Glyma06g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIEAGKDIPVRDPALLDDDGRIKRTGNVFTATTHIVTVVVGAGVLALAWAMAQLGWIAGIAVMILFACISVYTYNLVADCYRFPDPVSGKRNYTYMQAVDAYLGGKMHVFCGSVLYGKLAGVTVGYTITSSVSLVAIKKAICFHKKGHDAYCKFSNNPYMIGFGICQILLSQIPNFHKLTWLSTIAAATSFGYAFIGSGLSLSVVVSGKGEATSIFGSKVGPDLSEADKVWKVFSALGNIALACSFATVIYDIMDTLKSYPPENKQMKKANMLGITTMTILFLLCGGLGYAAFGDDTPGNILTGFGFYEPFWLVALGNVFIVVHMVGAYQVRSFYS*

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