Glyma06g09240 - SoyBase

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Report for Sequence Feature Glyma06g09240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6794869
stop:	6802470
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25840	AT	Annotation by Michelle Graham. TAIR10: Nucleotidylyl transferase superfamily protein \| chr2:11021924-11025158 FORWARD LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006418	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA aminoacylation for protein translation	SoyBase	N/A	ISS
GO:0006436	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophanyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004812	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA ligase activity	SoyBase	N/A	ISS
GO:0004830	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2713	KOG	Mitochondrial tryptophanyl-tRNA synthetase	JGI		ISS
PTHR10055	Panther	TRYPTOPHANYL-TRNA SYNTHETASE	JGI		ISS
PF00579	PFAM	tRNA synthetases class I (W and Y)	JGI		ISS
UniRef100_B9RS09	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tryptophanyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RS09_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K9G7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9G7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09240

Paralog	Evidence	Comments
Glyma04g09130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g088000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09240

Limit To All Plant Sequences

>Glyma06g09240.2   sequence type=transcript   gene model=Glyma06g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATATGAAGTGCCTTTTTAGGATATGTAACACCACTTCATGTTTGACTTGTGTCAGATACCATTCCCTTTTTTTAAAGTGTTCATGCTTCAAAGTTGTGCCTTATAACATGATCCGGCTAAGTAAATTCGTTTTCTCGGAGGAATTTGCGGACTAATTTTATGCTTTCCATTGTACTTGATTAATGGTCAAAGCCACTTTTCTGTTTTCTTGATGTTGAATGTTACTGCCCCATTTCTCATCCCTTCAGATATTATCTTACAGATTACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCCGGAGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTAGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTCTACACTTAATAATATTTACCAAGCAATGGGATTTTTTAAGAGACAGTGATAATTGATGCCAAATAAATTAAAGATTGGCGAGACGTCAACTTAAAAGCTAACTTCTGGATGATTCATGATGGGCCTCAAAATTTTGGAGTAATCTTATGGACATATACTTGACTACTGGAAATGGAAAGATTATTGATGCAAAGCCTAAAGGTCCCATTAGTTCTTGATGCAATGGGCTTTGTATCTCCTTCATTTTTCTCCGAGTATGGTCGTTGCCTTCATTTTATATTTTATTGTTTCAATCTCTTTCATTATTTACTTGTATTTTATAATGAATTCAGCATATTGATAAATTGTTCCGCCATTGTATTTGATGGAGACACATGACCTAGTCATCTTAATTCTGTCCCCACCATGTTCTCATGATGATGACACAACCCATTGTTTTAGATCATTAATTGGAACTAGATTAATAATTCTTCATTTTACTAATCATCTAACTTCATGCGTGCTTGTTTCCCC

Coding sequences of Glyma06g09240

Limit To All Plant Sequences

>Glyma06g09240.1   sequence type=CDS   gene model=Glyma06g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTTTCACATTTCGCGGTTCTATCGTCGTGTTGTTGTCCACGCTTGGCCCCTTCTCTGTCGCGTGCTTCAACCCTTCGTTCTCGCATCCGGTGTTGTACTACTCTCACTGCTACTTCTTCAGAGACTCCCACTCCAACCTTCGTGAAGAAACGAGTAGTGTCGGGGGTTCAGCCCACGGGCTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATTACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCCGGAGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTAGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTCTACACTTAATAATATTTACCAAGCAATGGGATTTTTTAAGAGACAGTGA

>Glyma06g09240.2   sequence type=CDS   gene model=Glyma06g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAATGTTACTGCCCCATTTCTCATCCCTTCAGATATTATCTTACAGATTACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAATTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCCGGAGCCCGGATAATGTCCCTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTCATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTAGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTCTACACTTAATAATATTTACCAAGCAATGGGATTTTTTAAGAGACAGTGA

Predicted protein sequences of Glyma06g09240

Limit To All Plant Sequences

>Glyma06g09240.1   sequence type=predicted peptide   gene model=Glyma06g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSHFAVLSSCCCPRLAPSLSRASTLRSRIRCCTTLTATSSETPTPTFVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLVSIYQLISGKTKEEVVQECQNMNWGTFKPLLTDALIDHLHPIQVRYEEIMSDSGYLDGVLAQGARNAADIADSTLNNIYQAMGFFKRQ*

>Glyma06g09240.2   sequence type=predicted peptide   gene model=Glyma06g09240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNVTAPFLIPSDIILQITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLVSIYQLISGKTKEEVVQECQNMNWGTFKPLLTDALIDHLHPIQVRYEEIMSDSGYLDGVLAQGARNAADIADSTLNNIYQAMGFFKRQ*

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