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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15215 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5238096-5239770 FORWARD LENGTH=258 | SoyBase | E_val: 1.00E-64 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0033562 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotranscriptional gene silencing by small RNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1K9G1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9G1_SOYBN | SoyBase | E_val: 2.00E-170 | ISS |
| UniRef100_Q9XI47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F9L1.16 n=1 Tax=Arabidopsis thaliana RepID=Q9XI47_ARATH | SoyBase | E_val: 5.00E-62 | ISS |
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Glyma06g09200 not represented in the dataset |
Glyma06g09200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g09100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g087700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g09200.2 sequence type=transcript gene model=Glyma06g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AACACCCTGACACCGCCCCTCCCCTTTCTCTCCCTCTCCCCAAAAAAGAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAGTTGCTAGGGTTTTCACTGCACTTGAGGTTCGTAGAGGAGAAATTCAAATTCAATGCAAAGAAATTAGATTTTTGAACGAAAGCTACGAACTTTAAGTTCATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGGTATTTTAATTACATTTTTTATGCCACCGGTTTGGGTTTCCAATTTTCATTCTTCAACTTTTTTTATGCCGTTCCTCTAGCATCATCGTTATCGGCTATACGAGCGGGATATGTTCTTTTTTGTGTTTGGAATTAGAAGCCTTTGGCTACAATTATAAGTTTGTGAGGTTAATAACGTTTGTCTTGTTCAACAATGTTTCTTGTAATGTCTTTAGTATTTGATGTTACTTCGATGATTCCAACTTTGATTGTTCATTGTTGGTCATGGTGTTTGTATGAAGGTAGTGAGTAGTCACTGGTATTTTGCGAAGGTTATGGATAAGGTTTTAAATTGCGGGTATGGTCGCTGATTCATCGCATTCCTTGATATTGCTGGAAATTGCGGACAAATGCCACTGAGGTGGCCATAATTGCAGTTGCGTTACAGTCATAGACATCCCCATAACGGATTGAGAAAATGGAGAAATTGTTAAGGGAACCTACAGGGGGATCATTGGGCAGGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGTCGTGCTGGGAAGCCTATCATAAAATGGACAGAGATTGAAAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGTAAGGAAGGAGAAACTATGCAAGACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCACAGATTTCTTAGCACAGGGGAAGCTGAAGTCCAAGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAATATCAAAACTTCAGTACGTCAACGCTCTATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATTGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGACGCTCACATTGTAGAGATCCAAAAGAGGATGCATGATATTAGAGGTTGCAGATGTCTCCTCTTAATTCATTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGACCAAGATCTTAGGTGTATTTGGGATCTCAATTCTCTTTGACATTCAAGGTGAGCTTTCAAACAGTCAGCAAACGACCCGTGTGCAGTAGGAAGCAACTAGCATTGACATTGGGTATCGTGCTCGATCATGCAAATCTCATAGTTGAAACATGTAAAGCCCTTTCCATGTCCACTTAAGTTTTGGTTGGGAGTGCTGTAGAAGTTGAATTATGAAACTTTTGGAAATGGTTATAATTGTAAGTCGGTAAGGGAAGTATACGGTAAAAAGGAGTCAGCTTCAGCTATGGAATTGTTAATACACTCGGGGGTAAAGACCTCATTGTTGAAAATGTATGTTTTCGGAATTGAATGATATAAGGAAAAGATTAAAGTTGTATGGTTCTATGGCGGGTAAATAAGAGTTGAATTACGGTTTAGTGCATCCATATGCGTACTTTGATAATGTATGTAGCAAAAGAATTTTTATATTCTTATGTATCATAGGAAGAAATTGAAGTATGATTTTAGTAAAGTTGATTTAATACCTGCAATAATTATTATACTTGTATTT
>Glyma06g09200.1 sequence type=CDS gene model=Glyma06g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGATTGAGAAAATGGAGAAATTGTTAAGGGAACCTACAGGGGGATCATTGGGCAGGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGTCGTGCTGGGAAGCCTATCATAAAATGGACAGAGATTGAAAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGTAAGGAAGGAGAAACTATGCAAGACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCACAGATTTCTTAGCACAGGGGAAGCTGAAGTCCAAGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAATATCAAAACTTCAGTACGTCAACGCTCTATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATTGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGACGCTCACATTGTAGAGATCCAAAAGAGGATGCATGATATTAGAGGTTGCAGATGTCTCCTCTTAATTCATTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGACCAAGATCTTAG >Glyma06g09200.2 sequence type=CDS gene model=Glyma06g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAATTGTTAAGGGAACCTACAGGGGGATCATTGGGCAGGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGTCGTGCTGGGAAGCCTATCATAAAATGGACAGAGATTGAAAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGTAAGGAAGGAGAAACTATGCAAGACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCACAGATTTCTTAGCACAGGGGAAGCTGAAGTCCAAGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAATATCAAAACTTCAGTACGTCAACGCTCTATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATTGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGACGCTCACATTGTAGAGATCCAAAAGAGGATGCATGATATTAGAGGTTGCAGATGTCTCCTCTTAATTCATTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGACCAAGATCTTAG
>Glyma06g09200.1 sequence type=predicted peptide gene model=Glyma06g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDRLRPRNRAVFSGFTNAEIEKMEKLLREPTGGSLGREFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSPQVPSSELMVPKCKEGETMQDPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVQVRFVGFGAEEDEWINIKTSVRQRSIPLESTECSNLKIGDPVLCFQERRDQAIYYDAHIVEIQKRMHDIRGCRCLLLIHYDHDNSEERVRLRRLCRRPRS* >Glyma06g09200.2 sequence type=predicted peptide gene model=Glyma06g09200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKLLREPTGGSLGREFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSPQVPSSELMVPKCKEGETMQDPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVQVRFVGFGAEEDEWINIKTSVRQRSIPLESTECSNLKIGDPVLCFQERRDQAIYYDAHIVEIQKRMHDIRGCRCLLLIHYDHDNSEERVRLRRLCRRPRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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