Glyma06g09170 - SoyBase

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Report for Sequence Feature Glyma06g09170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6752175
stop:	6753925
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32870	AT	Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr4:15862168-15862641 FORWARD LENGTH=157	SoyBase	E_val: 7.00E-53	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF10604	PFAM	Polyketide cyclase / dehydrase and lipid transport	JGI		ISS
UniRef100_C6TN70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TN70_SOYBN	SoyBase	E_val: 5.00E-114	ISS
UniRef100_G7J3I2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lachrymatory-factor synthase n=1 Tax=Medicago truncatula RepID=G7J3I2_MEDTR	SoyBase	E_val: 3.00E-74	ISS

Expression Patterns of Glyma06g09170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g09170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g087300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09170

Limit To All Plant Sequences

>Glyma06g09170.3   sequence type=transcript   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATATAAGGAGAAGACCACCAACCCATGGACACCAAGCATGAGAGAAATCTAAAACCACAAACTTAGTGGTGAAGCGTGCTTCGTGCATTTTGCCCACTACGTATATATTGTCATCTTGAGAGTTTGCGCACTTCCCCATTAACTCTCGTGATGATGCATAGAATACTTGCTTGGCTATATATATGCACATAAAGTTCGTTCAATAACTACTATATAGTTCCTCTATGCATGTAGCTACACTATCATAGAGAATCATGGAAGAGGAATCTAAGTCAAAGTGGGAAGGTAAAGCCATGGTTGAGGTAGTAGGCACAGGCGCAGAAGTAGCATGGGCTGTGTTAGAGGATTTCTGCAACATACACAAGTGGATCTCCTTAGACACATGCTACCAAGTAGATGGGATTCTAGGGCAACCTGGCCTAATCCGTTACTGTGCTTCCACCGTTGAAGAAGGTGTTGGTGCTGAGAAGACAACAACAATCAAGTGGGCCAAAGAGAAGATACTCGCGATTGATCCTGTCCAACGTTGTTTGACCTATGAAGTTGTTGAAAACAACATGGGATTTAAGTCCTATGTGGCCACTCTCAAAGTGCTGCCAATTGAAGGAGATGGGTGCAAGATAGAGTGGGGGTTTGTCAGTGATCCAGTTGAAGGGTGGAGTTGTCAAGGTTTGAAGTCATATGTTGAGTCTACTCTCCAGTCCATGGCCAAGAAGATTGAGTTTGCGTATAGCACACATTAGTTAAAGTGAAAACTAGGGTTTGGGATCTGGCCTGAGAATAAATCTGGTGGTGCTAAGGTTGTTTACAACTAATTAAACATAATAAGAGGGTGTGTCACGTGTGTTGTTTCCAACTCCTATTATCACTTTTGGTATTTGTTTGCCCAATTCATTCGAAACAAATACTTGCCATTTAATGTGTGTCCTAAAAAAAACTTATGCACTAGACCTATAATTTATGCTATTTATAAATGAGAATATTCTCAAATCGAAATTTTTTAAGTATCAATCTTTGAAATAATTTCACACATAAATTTATTGTACTTGCAAATTGCAATTGGCAACGCTAGGATGTTTCCTTTTTTTGTTTGTGTCAGTCTGATCCGTTTGCATCAGAGTTTTAAAACTCTCGACTTGGTAATTGATCTGGCAAGTG

>Glyma06g09170.4   sequence type=transcript   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTATATAAGGAGAAGACCACCAACCCATGGACACCAAGCATGAGAGAAATCTAAAACCACAAACTTAGTGGTGAAGCGTGCTTCGTGCATTTTGCCCACTACGTATATATTGTCATCTTGAGTTCCTCTATGCATGTAGCTACACTATCATAGAGAATCATGGAAGAGGAATCTAAGTCAAAGTGGGAAGGTAAAGCCATGGTTGAGGTAGTAGGCACAGGCGCAGAAGTAGCATGGGCTGTGTTAGAGGATTTCTGCAACATACACAAGTGGATCTCCTTAGACACATGCTACCAAGTAGATGGGATTCTAGGGCAACCTGGCCTAATCCGTTACTGTGCTTCCACCGTTGAAGAAGGTGTTGGTGCTGAGAAGACAACAACAATCAAGTGGGCCAAAGAGAAGATACTCGCGATTGATCCTGTCCAACGTTGTTTGACCTATGAAGTTGTTGAAAACAACATGGGATTTAAGTCCTATGTGGCCACTCTCAAAGTGCTGCCAATTGAAGGAGATGGGTGCAAGATAGAGTGGGGGTTTGTCAGTGATCCAGTTGAAGGGTGGAGTTGTCAAGGTTTGAAGTCATATGTTGAGTCTACTCTCCAGTCCATGGCCAAGAAGATTGAGTTTGCGTATAGCACACATTAGTTAAAGTGAAAACTAGGGTTTGGGATCTGGCCTGAGAATAAATCTGGTGGTGCTAAGGTTGTTTACAACTAATTAAACATAATAAGAGGGTGTGTCACGTGTGTTGTTTCCAACTCCTATTATCACTTTTGGTATTTGTTTGCCCAATTCATTCGAAACAAATACTTGCCATTTAATGTGTGTCCTAAAAAAAACTTATGCACTAGACCTATAATTTATGCTATTTATAAATGAGAATATTCTCAAATCGAAATTTTTTAAGTATCAATCTTTGAAATAATTTCACACATAAATTTATTGTACTTGCAAATTGCAATTGGCAACGCTAGGATGTTTCCTTTTTTTGTTTGTGTCAGTCTGATCCGTTTGCATCAGAGTTTTAAAACTCTCGACTTGGTAATTGATCTGGCAAGTG

Coding sequences of Glyma06g09170

Limit To All Plant Sequences

>Glyma06g09170.2   sequence type=CDS   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAATCTAAGTCAAAGTGGGAAGGTAAAGCCATGGTTGAGGTAGTAGGCACAGGCGCAGAAGTAGCATGGGCTGTGTTAGAGGATTTCTGCAACATACACAAGTGGATCTCCTTAGACACATGCTACCAAGTAGATGGGATTCTAGGGCAACCTGGCCTAATCCGTTACTGTGCTTCCACCGTTGAAGAAGGTGTTGGTGCTGAGAAGACAACAACAATCAAGTGGGCCAAAGAGAAGATACTCGCGATTGATCCTGTCCAACGTTGTTTGACCTATGAAGTTGTTGAAAACAACATGGGATTTAAGTCCTATGTGGCCACTCTCAAAGTGCTGCCAATTGAAGGAGATGGGTGCAAGATAGAGTGGGGGTTTGTCAGTGATCCAGTTGAAGGGTGGAGTTGTCAAGGTTTGAAGTCATATGTTGAGTCTACTCTCCAGTCCATGGCCAAGAAGATTGAGTTTGCGTATAGCACACATTAG

>Glyma06g09170.3   sequence type=CDS   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAATCTAAGTCAAAGTGGGAAGGTAAAGCCATGGTTGAGGTAGTAGGCACAGGCGCAGAAGTAGCATGGGCTGTGTTAGAGGATTTCTGCAACATACACAAGTGGATCTCCTTAGACACATGCTACCAAGTAGATGGGATTCTAGGGCAACCTGGCCTAATCCGTTACTGTGCTTCCACCGTTGAAGAAGGTGTTGGTGCTGAGAAGACAACAACAATCAAGTGGGCCAAAGAGAAGATACTCGCGATTGATCCTGTCCAACGTTGTTTGACCTATGAAGTTGTTGAAAACAACATGGGATTTAAGTCCTATGTGGCCACTCTCAAAGTGCTGCCAATTGAAGGAGATGGGTGCAAGATAGAGTGGGGGTTTGTCAGTGATCCAGTTGAAGGGTGGAGTTGTCAAGGTTTGAAGTCATATGTTGAGTCTACTCTCCAGTCCATGGCCAAGAAGATTGAGTTTGCGTATAGCACACATTAG

>Glyma06g09170.4   sequence type=CDS   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAATCTAAGTCAAAGTGGGAAGGTAAAGCCATGGTTGAGGTAGTAGGCACAGGCGCAGAAGTAGCATGGGCTGTGTTAGAGGATTTCTGCAACATACACAAGTGGATCTCCTTAGACACATGCTACCAAGTAGATGGGATTCTAGGGCAACCTGGCCTAATCCGTTACTGTGCTTCCACCGTTGAAGAAGGTGTTGGTGCTGAGAAGACAACAACAATCAAGTGGGCCAAAGAGAAGATACTCGCGATTGATCCTGTCCAACGTTGTTTGACCTATGAAGTTGTTGAAAACAACATGGGATTTAAGTCCTATGTGGCCACTCTCAAAGTGCTGCCAATTGAAGGAGATGGGTGCAAGATAGAGTGGGGGTTTGTCAGTGATCCAGTTGAAGGGTGGAGTTGTCAAGGTTTGAAGTCATATGTTGAGTCTACTCTCCAGTCCATGGCCAAGAAGATTGAGTTTGCGTATAGCACACATTAG

Predicted protein sequences of Glyma06g09170

Limit To All Plant Sequences

>Glyma06g09170.2   sequence type=predicted peptide   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESKSKWEGKAMVEVVGTGAEVAWAVLEDFCNIHKWISLDTCYQVDGILGQPGLIRYCASTVEEGVGAEKTTTIKWAKEKILAIDPVQRCLTYEVVENNMGFKSYVATLKVLPIEGDGCKIEWGFVSDPVEGWSCQGLKSYVESTLQSMAKKIEFAYSTH*

>Glyma06g09170.3   sequence type=predicted peptide   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESKSKWEGKAMVEVVGTGAEVAWAVLEDFCNIHKWISLDTCYQVDGILGQPGLIRYCASTVEEGVGAEKTTTIKWAKEKILAIDPVQRCLTYEVVENNMGFKSYVATLKVLPIEGDGCKIEWGFVSDPVEGWSCQGLKSYVESTLQSMAKKIEFAYSTH*

>Glyma06g09170.4   sequence type=predicted peptide   gene model=Glyma06g09170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEESKSKWEGKAMVEVVGTGAEVAWAVLEDFCNIHKWISLDTCYQVDGILGQPGLIRYCASTVEEGVGAEKTTTIKWAKEKILAIDPVQRCLTYEVVENNMGFKSYVATLKVLPIEGDGCKIEWGFVSDPVEGWSCQGLKSYVESTLQSMAKKIEFAYSTH*

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