Glyma06g09080 - SoyBase

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Report for Sequence Feature Glyma06g09080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6665494
stop:	6667093
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25830	AT	Annotation by Michelle Graham. TAIR10: GATA transcription factor 12 \| chr5:9004398-9005502 REVERSE LENGTH=331	SoyBase	E_val: 4.00E-86	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PTHR10071	Panther	TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)	JGI		ISS
PTHR10071:SF113	Panther	ZINC FINGER (GATA TYPE) FAMILY PROTEIN	JGI		ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
UniRef100_G7J3H0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7J3H0_MEDTR	SoyBase	E_val: 2.00E-121	ISS
UniRef100_I1K9E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9E7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09080

Paralog	Evidence	Comments
Glyma04g08990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g086400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09080

Limit To All Plant Sequences

>Glyma06g09080.1   sequence type=CDS   gene model=Glyma06g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCACAAGAGTTTTTCCAGAACACCTTCTGCCCCCAATTCCCCTCCGGTACCAACATCACACCCTCCAACGCCAATCCCTCCGCCGCCACCGCCGACCACTTCCTCGTCGAAGACTTCTTCGACTTCTCCAACGACGACAACGACGCCACCGCTGTCACCGACGCCACCTTCGACTCCCTCCCCACCGACGTCGACTCCCCCAACGTTACCCCCCTCGACAGCACCACCAAGAACTCCAATTTGCCCTCCTCCTCCTCCGCCGACGCCCATTTCTCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAATTGGAGTGGCTGTCGAAATTCGCGGAGGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATATCGGGTGTGAGAGCGCAAAACGATGCTGCATCGTCTGAAACGCGTGACCCGAACCCGGTTATGTTCAACCCGCAAGTGTCGGTTCGAGGCAAGGCTAGGAGCAAGCGGACACGTGGGCCCCCATGCAACTGGACCTCTCGCCTCGTTGTCCTCTCTCCCAACACCACGTCGTCGTCTTCTAACTCCGACGCCGGTAAGAAGCCGGCGACGCCGCGGAGGAGAGAGGCTGCCTTCGCCGAAGGCGGCAGCGAGGGGCGGAAGTGCCTGCATTGCGCCACGGACAAGACCCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGCAATGCGTGCGGCGTGAGGTACAAGTCGGGCCGGCTCGTCCCAGAGTACAGGCCCGCGGCGAGCCCAACGTTTGTTCTGACGAAGCACTCGAATTCGCACCGCAAGGTGCTGGAACTGCGGCGGCAAAAGGAAATGGTGAAGGTCCAGCAGCATCAGTTTCTCCAACTGCATCAACAGAACATGATGTTCGATGTGCCATCATCCAACGGTGAGGATTACTTGATCCATCAGCACGTGGGCCCCGATTACACGCACCTCATCTAG

Predicted protein sequences of Glyma06g09080

Limit To All Plant Sequences

>Glyma06g09080.1   sequence type=predicted peptide   gene model=Glyma06g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAQEFFQNTFCPQFPSGTNITPSNANPSAATADHFLVEDFFDFSNDDNDATAVTDATFDSLPTDVDSPNVTPLDSTTKNSNLPSSSSADAHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGVRAQNDAASSETRDPNPVMFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTTSSSSNSDAGKKPATPRRREAAFAEGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVKVQQHQFLQLHQQNMMFDVPSSNGEDYLIHQHVGPDYTHLI*

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