Report for Sequence Feature Glyma06g09050
Feature Type: gene_model
Chromosome: Gm06
Start: 6647326
stop: 6651348
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g09050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32900 AT
Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase II (PTH2) family protein | chr4:15878944-15880979 REVERSE LENGTH=193
SoyBase E_val: 6.00E-91 ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004045 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity
SoyBase N/A ISS
KOG3282
KOG
Uncharacterized conserved protein
JGI ISS
PTHR12649 Panther
PEPTIDYL-TRNA HYDROLASE 2
JGI ISS
PTHR12649:SF6 Panther
UNCHARACTERIZED
JGI ISS
PF01981 PFAM
Peptidyl-tRNA hydrolase PTH2
JGI ISS
UniRef100_G7J3G3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-tRNA hydrolase n=1 Tax=Medicago truncatula RepID=G7J3G3_MEDTR
SoyBase E_val: 8.00E-103 ISS
UniRef100_I1K9E3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9E3_SOYBN
SoyBase E_val: 3.00E-141 ISS
Expression Patterns of Glyma06g09050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g09050
Paralog Evidence Comments
Glyma04g08960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g09050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g086200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g09050
Transcripts of Glyma06g09050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g09050.2 sequence type=transcript gene model=Glyma06g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GCGGCATGCTCTGTTCAAAGCGGCCACGGGTAATCTTGTTCTTGTTCCATCTTCTCAATATCCACTTACCCTTTTGTGCTGCCACTAATAAAACTGCACTTCAACTTCAAATTTTCAACCTTTCCCCATTCACGTCCCTTCTTCCTTCCAATGTTCCCTTCCATCATAAATTCTAATCAATCTCGTGACCAGCAACAACAAAAGCAAAAGGGAGAATGGTTAGCAGGAAGTTTCAAGGCAGAGAACTTCATTCCAGGGCTTGTTATAGGTTTCATTTTTGGGTTGTTGTTGGATTTATCAAAGCCCGGTAGAAATCACTTGTCCAAGAAAATTTGCTCATCTGCCAGACCTCAACAACAGCAAATCTCAGTCTCAAGCAATGCTGATCAAGAACTTAAAATGGTTCTGGTCGTTAGGCAAGACCTAAAGATGAAATCTGGAAAGATTGCATCCCAATGTGCTCATGCTGCCACTGGCATGTACGCTGAATTAATGCAAAGATGGGAACAGTGTGGCCAGCCCAAAATTGTTGTGACTTGCAGGAATCAACAAGAAATGAATAAACTAGCGGAAGCAGCCGAGAGTATTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGAACACAGGTTTCGGCAGGATCAAAGACCGTTCTTGCTGTTGGACCTGGACCAAAATCTTCTGTGGATTCAGTGACAGGGAGATTGCCCCTGCTTTGACAGCATTAATATGATAAATCACCCGAGCTTGTTGCCACTTGGTCTGTGTTCTAACGCGTTATCCGGCATTGTCTGATTCCTTATCCTTATTGTGGCCTATGCAACATGGCTATGGTGGTTCTATAATTCGTAGTGTTAAATAGGACTAATTCTTAATCAGATCCCTTTCCTGTTTTATACCTCTAATTGTATGGGTTTTCAGCATCCTGTCTAGCGGCTCGGGAATGAACTGAAGACTTTTATTTATTTATATATTTGGATCGGTTGGTAAACTATCTTTCCTTATAAGGCAGGAAGTTCATTATCTTTTTTTATCAATGTCCCAATTGGTTGTGTGATTCAAAATAAGAGAAGGGGAGAGATTATGACAATGGTTATCAGAGTAGACTGACTTTGAGCATGCTTGAAAACAAGGTGAAAAATGACTTCTGAGGTAAAATTGTTTTTACTTTTATCCGTTAAACCTGTATTATAACATGTGTCGTGACAATTATTTCGACTACAATCTAAATATGCACTTGGTTCATTCAAGTTAACCTATTGTGAACTAGG
Coding sequences of Glyma06g09050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g09050.1 sequence type=CDS gene model=Glyma06g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCCTTCCATCATAAATTCTAATCAATCTCGTGACCAGCAACAACAAAAGCAAAAGGGAGAATGGTTAGCAGGAAGTTTCAAGGCAGAGAACTTCATTCCAGGGCTTGTTATAGGTTTCATTTTTGGGTTGTTGTTGGATTTATCAAAGCCCGGTAGAAATCACTTGTCCAAGAAAATTTGCTCATCTGCCAGACCTCAACAACAGCAAATCTCAGTCTCAAGCAATGCTGATCAAGAACTTAAAATGGTTCTGGTCGTTAGGCAAGACCTAAAGATGAAATCTGGAAAGATTGCATCCCAATGTGCTCATGCTGCCACTGGCATGTACGCTGAATTAATGCAAAGTGATCGGTATCTTTTGAGAAGATGGGAACAGTGTGGCCAGCCCAAAATTGTTGTGACTTGCAGGAATCAACAAGAAATGAATAAACTAGCGGAAGCAGCCGAGAGTATTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGAACACAGGTTTCGGCAGGATCAAAGACCGTTCTTGCTGTTGGACCTGGACCAAAATCTTCTGTGGATTCAGTGACAGGGAGATTGCCCCTGCTTTGA
>Glyma06g09050.2 sequence type=CDS gene model=Glyma06g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCCTTCCATCATAAATTCTAATCAATCTCGTGACCAGCAACAACAAAAGCAAAAGGGAGAATGGTTAGCAGGAAGTTTCAAGGCAGAGAACTTCATTCCAGGGCTTGTTATAGGTTTCATTTTTGGGTTGTTGTTGGATTTATCAAAGCCCGGTAGAAATCACTTGTCCAAGAAAATTTGCTCATCTGCCAGACCTCAACAACAGCAAATCTCAGTCTCAAGCAATGCTGATCAAGAACTTAAAATGGTTCTGGTCGTTAGGCAAGACCTAAAGATGAAATCTGGAAAGATTGCATCCCAATGTGCTCATGCTGCCACTGGCATGTACGCTGAATTAATGCAAAGATGGGAACAGTGTGGCCAGCCCAAAATTGTTGTGACTTGCAGGAATCAACAAGAAATGAATAAACTAGCGGAAGCAGCCGAGAGTATTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGAACACAGGTTTCGGCAGGATCAAAGACCGTTCTTGCTGTTGGACCTGGACCAAAATCTTCTGTGGATTCAGTGACAGGGAGATTGCCCCTGCTTTGA
Predicted protein sequences of Glyma06g09050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g09050.1 sequence type=predicted peptide gene model=Glyma06g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFPSIINSNQSRDQQQQKQKGEWLAGSFKAENFIPGLVIGFIFGLLLDLSKPGRNHLSKKICSSARPQQQQISVSSNADQELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQSDRYLLRRWEQCGQPKIVVTCRNQQEMNKLAEAAESIGLPTFVVADAGRTQVSAGSKTVLAVGPGPKSSVDSVTGRLPLL*
>Glyma06g09050.2 sequence type=predicted peptide gene model=Glyma06g09050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFPSIINSNQSRDQQQQKQKGEWLAGSFKAENFIPGLVIGFIFGLLLDLSKPGRNHLSKKICSSARPQQQQISVSSNADQELKMVLVVRQDLKMKSGKIASQCAHAATGMYAELMQRWEQCGQPKIVVTCRNQQEMNKLAEAAESIGLPTFVVADAGRTQVSAGSKTVLAVGPGPKSSVDSVTGRLPLL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
