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Report for Sequence Feature Glyma06g09040

Feature Type:gene_model
Chromosome:Gm06
Start:6635808
stop:6636500
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g09040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11620AT Annotation by Michelle Graham. TAIR10: SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related | chr5:3739076-3740127 REVERSE LENGTH=273 SoyBaseE_val: 1.00E-66ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR21540Panther ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 2 JGI ISS
PF04434PFAM SWIM zinc finger JGI ISS
UniRef100_G7J3G2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=1 Tax=Medicago truncatula RepID=G7J3G2_MEDTR SoyBaseE_val: 5.00E-113ISS
UniRef100_UPI000233A31CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A31C related cluster n=1 Tax=unknown RepID=UPI000233A31C SoyBaseE_val: 3.00E-169ISS

Expression Patterns of Glyma06g09040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09040
ParalogEvidenceComments
Glyma04g08950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g086100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g09040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g09040
>Glyma06g09040.2   sequence type=CDS   gene model=Glyma06g09040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCGTGCCTCCAATTCCAATTCTCCATACCATTACCACCACCACCACCCTCGTTTCAAACCAAGCCAACCTATTTCAGACCGAATAGTTCGTGCCCTCCGCCACCGCCTGCGCCTCCTCCACCGTTCTGGCTCCACCTTCTTCATATTAGGCGCCACCGGAAACGTGTACACGGTGACCTTATCCTCCTCACCCTCATGCACCTGCCCTGACCGCACAACCCCATGCAAGCACATTCTATTCGTTTTCATTCGAGTTTTGGGCGTGTCACTCGATGATGTCTGTCTGAGGAGGAGGACCCTTCGTCCCTGCCAGCTCCAACGCCTCCTCGGAGCGCCTACATTGCCGGAGGTGGTGGCGGGGGGCACCCTGAGGCAGAGGTTTCACCAGCTGTTCTTTGGTGGAGGGTCAACAGCAGGGCCAAAGATAGAGATGGAGGAGGGTGCCACTTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCAAAACCTGGTGGCATGTGGAACATGCCGTAACCCTATCCATGAAGAGTGCTTGATAAAGTGGAAGAGAACCAAGGGAAGAAGTGCTAGTTGTGTGATTTGTAGAGCAAGGTGGAGGGATAGGGTGGAGCAAGATGAGTATCTGAACCTGTCTGCTTATGTTGGCGAAGATGATATGGAAGAACCTGATGTCTGCACTTGTTAA
Predicted protein sequences of Glyma06g09040
>Glyma06g09040.2   sequence type=predicted peptide   gene model=Glyma06g09040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRASNSNSPYHYHHHHPRFKPSQPISDRIVRALRHRLRLLHRSGSTFFILGATGNVYTVTLSSSPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGAPTLPEVVAGGTLRQRFHQLFFGGGSTAGPKIEMEEGATCPVCLEEMGKEQNLVACGTCRNPIHEECLIKWKRTKGRSASCVICRARWRDRVEQDEYLNLSAYVGEDDMEEPDVCTC*






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