Glyma06g09010 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g09010

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6611640
stop:	6616515
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25830	AT	Annotation by Michelle Graham. TAIR10: YebC-related \| chr2:11019091-11021665 REVERSE LENGTH=331	SoyBase	E_val: 2.00E-149	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0042819	GO-bp	Annotation by Michelle Graham. GO Biological Process: vitamin B6 biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG2972	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12532	Panther	UNCHARACTERIZED	JGI		ISS
PF01709	PFAM	Domain of unknown function DUF28	JGI		ISS
UniRef100_I0YN65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable transcriptional regulatory protein COCSUDRAFT_37977 n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0YN65_9CHLO	SoyBase	E_val: 8.00E-62	ISS
UniRef100_I1K9D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9D8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09010

Paralog	Evidence	Comments
Glyma04g08920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g085900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09010

Limit To All Plant Sequences

>Glyma06g09010.1   sequence type=CDS   gene model=Glyma06g09010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGCACTGCTTCTGCTTCAGCTTCAGGCTTTGACAAGTCGGGTTTCACTTTCCTCCTCCACCTTTGTTCGCGGCAAAAGCTTGTGGTTCGATGCAAATAGAGATAATTCCCAAGTGAGAAGGATATGGTCTTCCACCCCTGTTTGTATGGGCCGCCGTTCCAGCAAGATTGCTGGGAGAAAGGGTGCCCAAGATGCAAAGAAAGCAAAACTATACTCAAGGATAGGAAAGGAAGTCGTGTCTGCTGTAAAGCGAGGTGGTCCAAATGTAACATCCAACTCAGTTTTGGCTGCTGTACTTGAGAAAGCCAAGGAGCTTGATGTGCCTAAAGATATTGTTGAGCGCAATATGAAGAGAGCTTCTGAGAAAGGACAAGAGGCTTATATCGAGAAAGTCTATGAGGTTTATGGTTATGGAGGAGTTAGTATGGTAGTTGAGGTATCAACTGACAAGATACATCGTTCTGTGGCAAAGATTAGAGAAGTGATAAAGGACTATGGAGGAAAGATGGCAGATTCTGGATCTGTGACATTTAAGTTTAAACGTGTTCGGGTAGTAAATATTAAAGCCACTAATGCTGACAAAGATCAGCTGCTTGCCATTGCTTTAGATGCTGGAGCTGAGGATGTAATTGATCCTCCAACTTATGAAGATGACACTGAAGAGGATAGGTATTATAAAATTGTAGGTTCTTCAGAGAACTATTCATCTATACTATCTAAGCTGCGAGAGGAGGGCATAGATTTTGAGCCTGATAATGGTTCCGAGCTTCTCCCAAATACCCCGGTTGAGGTAGATGATGAGGCTATGGACTTGAACAAGGAACTTATGAGCAAATTACTTGAGCTTGATGATGTTGATGCTGTTTATACAGATCAGAAGTAA

Predicted protein sequences of Glyma06g09010

Limit To All Plant Sequences

>Glyma06g09010.1   sequence type=predicted peptide   gene model=Glyma06g09010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRALLLLQLQALTSRVSLSSSTFVRGKSLWFDANRDNSQVRRIWSSTPVCMGRRSSKIAGRKGAQDAKKAKLYSRIGKEVVSAVKRGGPNVTSNSVLAAVLEKAKELDVPKDIVERNMKRASEKGQEAYIEKVYEVYGYGGVSMVVEVSTDKIHRSVAKIREVIKDYGGKMADSGSVTFKFKRVRVVNIKATNADKDQLLAIALDAGAEDVIDPPTYEDDTEEDRYYKIVGSSENYSSILSKLREEGIDFEPDNGSELLPNTPVEVDDEAMDLNKELMSKLLELDDVDAVYTDQK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain