Glyma06g08960 - SoyBase

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Report for Sequence Feature Glyma06g08960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6535654
stop:	6540335
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25820	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr5:8997248-8999574 REVERSE LENGTH=654	SoyBase	E_val: 0	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF37	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7IB43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exostosin-2 n=1 Tax=Medicago truncatula RepID=G7IB43_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A319	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A319 related cluster n=1 Tax=unknown RepID=UPI000233A319	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08960

Paralog	Evidence	Comments
Glyma04g08881	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g085200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08960

Limit To All Plant Sequences

>Glyma06g08960.3   sequence type=transcript   gene model=Glyma06g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGATTAGGTGATCCAAAATATATTATTTAATAATTTCTAGTACACATAATTGCCCTTTGTTTTGAAATTGGATTTAATATTAGTATGTTTTTTACGGCTACTGATGAAGAGAGAGAAGAAAGTGGTAAATTTTGGCTGCTGGCTTATGCAGCTGAATGCTGATGTTGGTGGCGTTCAGTTCAGCGTATTAAAGGGATCACGGTCTACCCACTTCAGTTCAACCCTTCTGTCCCAACTTTCCAACAACAACAACAACAACAAAGTACTCCAACTTCGAGCTAGAAAACAGAAGCTTCCAACCTAGATGCCGGGAATATTTTCTTCTCTTCTCGTCTTTGTAACTCACTGTACCAGGAGCAACCTAAGGACTAAGGAGGAGTTGAACGCTGTTTATTTGTTGAGTTGATATGGTAATTGGGCAGTGACGGTTGTTCAGTAATTTTAGCAAAATGGGTCAAGAATTGTGGTCAATATTTCAGCTGGAAAGAAAGAGATTGTTTTGGCTAATCGGCATTACAGTTGCAATCATATTAGCATTCCAATATTTGGAACTTCCTTATGGTGGCGTTCAACCCATTGTATTCTCTGCCGAAAACACACCAACATCGGATAGCATTAGATTCCAAGCTGCAGATCTACCATCTGAGTCTGAAACGTTCAACAACATGACATTTTTTAACAAAGCAAATTCTACTGATGAAAATGCCTTTGAGATTGCTAATGAAACTAGGACTTCTGAGGAAAAGGGTACTGTTTCAAACACTGGTTTAATCACAGAACCGGGAAGGGAATCAAGCAGATCTTTAGGATTTGATGAAACTAATGAAAGTTCCACTGTGGAAAGTATTGAGATATCAAATAATGGTTCTGCAACTGAGCAGACAGGAAAGTTTGGACTGAGCATTTACAACAATACTATTTCTAGTTCCCCTTCTCATGCAATAATACCAACTAATTTAGCTCCACCTCTAAGTCCAACAGAAGTTAGCCCAAATATTACATCTCCAATGTCATCAAATGATTATGATGAAACTGATTTCGCCGAGGAAGAGCGGTTCAAGCCATCAAAAGATGAATTCAATATAGTAGGCAATAATTCTTCTATCAACAGTGTGCCTAAGGAGACTAAAGGTTCTCAAATACCACTTCCAGAAGTAACAACAATTTCTGAAATGAATGAGTTATTACTTCAAAACCGTGCCTCATATCGTTCTATGAGGCCTAGGTGGTCTTCGGCTGTTGATCAAGAGCTACTGCAGGCCAGATTAGAGATTGAAAATGCACCAATCGTAAATAATGTTGAAAATCTTTATGCTCCCCTTTTTCGAAACATTTCGAGGTTCAAGAGGAGCTATGAATTAATGGAAAAAACTCTTAAAGTGTATGTGTATAGAGAAGGAGACAAGCCCATAATGCATTCACCATATCTTTTGGGAATTTATGCTTCAGAGGGATGGTTCATGAGGCTGATGGAAGCTAGTAAGCAATTTGTGACTAAGGACCCAAAGAAGGCCCACCTATTTTACCTACCTTTCAGTTCTCGGATGCTAGAGGAAACTTTGTACGTACCCAATTCCCATAGTTCTAGGAACCTGATTCAGTATCTGAAAAATTATGTAGACATGATTGCCGGGAAACATCGTTTCTGGAACAGAACAGGAGGTGCTGATCATTTTCTTGTTGCTTGCCATGACTGGGCCCCTACAGAAACAAGGCAACACATGGCTAGGTGCTTAAGAGCCCTATGCAATGCTGATGTGAAAGAAGGCTTTGTCTTGGGGAAGGACATTTCTCTTCCTGAAACTTATGTCCGCAATGCTCAGAAACCCACAAGAAACATTGGCGGAAACCGGGTTTCAAAGAGGAAAACTCTGGCATTTTTTGCAGGGGGAATGCATGGCTATGTTAGGCCAATCCTATTGCAGCACTGGGAAAATAAAGACCCTGCCATGAAAATCTTCGGGATACTGCCAAAGTCTAAGGGCAACAGGAACTACATCCAGTACATGAAGAGCAGCAAGTACTGTATTTGCGCAAAGGGCTATGAAGTCAATAGTCCAAGAGTTGTGGAGGCCATCTTATATGAATGTGTCCCAGTTATTTTATCAGATAACTTTGTGCCTCCATTTTTTGAGATGTTGAATTGGGAATCCTTTGCTGTTTTTGTCTTGGAGAAGGATATTCCAAATCTGAAGAATATACTCCTTTCCATACCTCAAAAGAGGTATCTTCAAATGCAGATGATGGTGAGAAAGGTGCAGCAGCATTTCCTTTGGCATAGGAGCCCTGTCAAGTATGATATATTCCACATGGTACTTCATTCCATTTGGTACAACAGAGTCTTCACCGCAAGAGCTAGATAGACTGAAAGAAGCTTTTCTTTAGGGGAACAACATTCGTTGGGGACAGACACAGAATAAGACTGAAGTTGGTAATCAATAAGGTCATTTTCATGTGTTTTTTTTTTGTTTTGGAGTTTTTGGTGCAATTAAATTTGTATATATTTATTCTTACGTTGTCTTGAATCATTCTTAGTCTTCCTACAAACCTTGTTGGATGTTTGGGTAGTTTATATAAGGTTAAATTCAAACCTTATTTTCACTATTGTAAAAAAAAAAAAAAAATCATAGTCCTCGTATGAGTCTTATGCTCCTGTGAGTATGGACTTTCGTAAGGGACTTAGGTACGAGGTCACACCGTTTAGTGACAGTGCTATAAAATAAAATTAATTATAATTCGTACCATATCAATTATGTAAACACGCATCTTAAATAAATAAATAGAAGATC

Coding sequences of Glyma06g08960

Limit To All Plant Sequences

>Glyma06g08960.2   sequence type=CDS   gene model=Glyma06g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAGAATTGTGGTCAATATTTCAGCTGGAAAGAAAGAGATTGTTTTGGCTAATCGGCATTACAGTTGCAATCATATTAGCATTCCAATATTTGGAACTTCCTTATGGTGGCGTTCAACCCATTGTATTCTCTGCCGAAAACACACCAACATCGGATAGCATTAGATTCCAAGCTGCAGATCTACCATCTGAGTCTGAAACGTTCAACAACATGACATTTTTTAACAAAGCAAATTCTACTGATGAAAATGCCTTTGAGATTGCTAATGAAACTAGGACTTCTGAGGAAAAGGGTACTGTTTCAAACACTGGTTTAATCACAGAACCGGGAAGGGAATCAAGCAGATCTTTAGGATTTGATGAAACTAATGAAAGTTCCACTGTGGAAAGTATTGAGATATCAAATAATGGTTCTGCAACTGAGCAGACAGGAAAGTTTGGACTGAGCATTTACAACAATACTATTTCTAGTTCCCCTTCTCATGCAATAATACCAACTAATTTAGCTCCACCTCTAAGTCCAACAGAAGTTAGCCCAAATATTACATCTCCAATGTCATCAAATGATTATGATGAAACTGATTTCGCCGAGGAAGAGCGGTTCAAGCCATCAAAAGATGAATTCAATATAGTAGGCAATAATTCTTCTATCAACAGTGTGCCTAAGGAGACTAAAGGTTCTCAAATACCACTTCCAGAAGTAACAACAATTTCTGAAATGAATGAGTTATTACTTCAAAACCGTGCCTCATATCGTTCTATGAGGCCTAGGTGGTCTTCGGCTGTTGATCAAGAGCTACTGCAGGCCAGATTAGAGATTGAAAATGCACCAATCGTAAATAATGTTGAAAATCTTTATGCTCCCCTTTTTCGAAACATTTCGAGGTTCAAGAGGAGCTATGAATTAATGGAAAAAACTCTTAAAGTGTATGTGTATAGAGAAGGAGACAAGCCCATAATGCATTCACCATATCTTTTGGGAATTTATGCTTCAGAGGGATGGTTCATGAGGCTGATGGAAGCTAGTAAGCAATTTGTGACTAAGGACCCAAAGAAGGCCCACCTATTTTACCTACCTTTCAGTTCTCGGATGCTAGAGGAAACTTTGTACGTACCCAATTCCCATAGTTCTAGGAACCTGATTCAGTATCTGAAAAATTATGTAGACATGATTGCCGGGAAACATCGTTTCTGGAACAGAACAGGAGGTGCTGATCATTTTCTTGTTGCTTGCCATGACTGGGCCCCTACAGAAACAAGGCAACACATGGCTAGGTGCTTAAGAGCCCTATGCAATGCTGATGTGAAAGAAGGCTTTGTCTTGGGGAAGGACATTTCTCTTCCTGAAACTTATGTCCGCAATGCTCAGAAACCCACAAGAAACATTGGCGGAAACCGGGTTTCAAAGAGGAAAACTCTGGCATTTTTTGCAGGGGGAATGCATGGCTATGTTAGGCCAATCCTATTGCAGCACTGGGAAAATAAAGACCCTGCCATGAAAATCTTCGGGATACTGCCAAAGTCTAAGGGCAACAGGAACTACATCCAGTACATGAAGAGCAGCAAGTACTGTATTTGCGCAAAGGGCTATGAAGTCAATAGTCCAAGAGTTGTGGAGGCCATCTTATATGAATGTGTCCCAGTTATTTTATCAGATAACTTTGTGCCTCCATTTTTTGAGATGTTGAATTGGGAATCCTTTGCTGTTTTTGTCTTGGAGAAGGATATTCCAAATCTGAAGAATATACTCCTTTCCATACCTCAAAAGAGGTATCTTCAAATGCAGATGATGGTGAGAAAGGTGCAGCAGCATTTCCTTTGGCATAGGAGCCCTGTCAAGTATGATATATTCCACATGGTACTTCATTCCATTTGGTACAACAGAGTCTTCACCGCAAGAGCTAGATAG

>Glyma06g08960.3   sequence type=CDS   gene model=Glyma06g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAAGAATTGTGGTCAATATTTCAGCTGGAAAGAAAGAGATTGTTTTGGCTAATCGGCATTACAGTTGCAATCATATTAGCATTCCAATATTTGGAACTTCCTTATGGTGGCGTTCAACCCATTGTATTCTCTGCCGAAAACACACCAACATCGGATAGCATTAGATTCCAAGCTGCAGATCTACCATCTGAGTCTGAAACGTTCAACAACATGACATTTTTTAACAAAGCAAATTCTACTGATGAAAATGCCTTTGAGATTGCTAATGAAACTAGGACTTCTGAGGAAAAGGGTACTGTTTCAAACACTGGTTTAATCACAGAACCGGGAAGGGAATCAAGCAGATCTTTAGGATTTGATGAAACTAATGAAAGTTCCACTGTGGAAAGTATTGAGATATCAAATAATGGTTCTGCAACTGAGCAGACAGGAAAGTTTGGACTGAGCATTTACAACAATACTATTTCTAGTTCCCCTTCTCATGCAATAATACCAACTAATTTAGCTCCACCTCTAAGTCCAACAGAAGTTAGCCCAAATATTACATCTCCAATGTCATCAAATGATTATGATGAAACTGATTTCGCCGAGGAAGAGCGGTTCAAGCCATCAAAAGATGAATTCAATATAGTAGGCAATAATTCTTCTATCAACAGTGTGCCTAAGGAGACTAAAGGTTCTCAAATACCACTTCCAGAAGTAACAACAATTTCTGAAATGAATGAGTTATTACTTCAAAACCGTGCCTCATATCGTTCTATGAGGCCTAGGTGGTCTTCGGCTGTTGATCAAGAGCTACTGCAGGCCAGATTAGAGATTGAAAATGCACCAATCGTAAATAATGTTGAAAATCTTTATGCTCCCCTTTTTCGAAACATTTCGAGGTTCAAGAGGAGCTATGAATTAATGGAAAAAACTCTTAAAGTGTATGTGTATAGAGAAGGAGACAAGCCCATAATGCATTCACCATATCTTTTGGGAATTTATGCTTCAGAGGGATGGTTCATGAGGCTGATGGAAGCTAGTAAGCAATTTGTGACTAAGGACCCAAAGAAGGCCCACCTATTTTACCTACCTTTCAGTTCTCGGATGCTAGAGGAAACTTTGTACGTACCCAATTCCCATAGTTCTAGGAACCTGATTCAGTATCTGAAAAATTATGTAGACATGATTGCCGGGAAACATCGTTTCTGGAACAGAACAGGAGGTGCTGATCATTTTCTTGTTGCTTGCCATGACTGGGCCCCTACAGAAACAAGGCAACACATGGCTAGGTGCTTAAGAGCCCTATGCAATGCTGATGTGAAAGAAGGCTTTGTCTTGGGGAAGGACATTTCTCTTCCTGAAACTTATGTCCGCAATGCTCAGAAACCCACAAGAAACATTGGCGGAAACCGGGTTTCAAAGAGGAAAACTCTGGCATTTTTTGCAGGGGGAATGCATGGCTATGTTAGGCCAATCCTATTGCAGCACTGGGAAAATAAAGACCCTGCCATGAAAATCTTCGGGATACTGCCAAAGTCTAAGGGCAACAGGAACTACATCCAGTACATGAAGAGCAGCAAGTACTGTATTTGCGCAAAGGGCTATGAAGTCAATAGTCCAAGAGTTGTGGAGGCCATCTTATATGAATGTGTCCCAGTTATTTTATCAGATAACTTTGTGCCTCCATTTTTTGAGATGTTGAATTGGGAATCCTTTGCTGTTTTTGTCTTGGAGAAGGATATTCCAAATCTGAAGAATATACTCCTTTCCATACCTCAAAAGAGGTATCTTCAAATGCAGATGATGGTGAGAAAGGTGCAGCAGCATTTCCTTTGGCATAGGAGCCCTGTCAAGTATGATATATTCCACATGGTACTTCATTCCATTTGGTACAACAGAGTCTTCACCGCAAGAGCTAGATAG

Predicted protein sequences of Glyma06g08960

Limit To All Plant Sequences

>Glyma06g08960.2   sequence type=predicted peptide   gene model=Glyma06g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQELWSIFQLERKRLFWLIGITVAIILAFQYLELPYGGVQPIVFSAENTPTSDSIRFQAADLPSESETFNNMTFFNKANSTDENAFEIANETRTSEEKGTVSNTGLITEPGRESSRSLGFDETNESSTVESIEISNNGSATEQTGKFGLSIYNNTISSSPSHAIIPTNLAPPLSPTEVSPNITSPMSSNDYDETDFAEEERFKPSKDEFNIVGNNSSINSVPKETKGSQIPLPEVTTISEMNELLLQNRASYRSMRPRWSSAVDQELLQARLEIENAPIVNNVENLYAPLFRNISRFKRSYELMEKTLKVYVYREGDKPIMHSPYLLGIYASEGWFMRLMEASKQFVTKDPKKAHLFYLPFSSRMLEETLYVPNSHSSRNLIQYLKNYVDMIAGKHRFWNRTGGADHFLVACHDWAPTETRQHMARCLRALCNADVKEGFVLGKDISLPETYVRNAQKPTRNIGGNRVSKRKTLAFFAGGMHGYVRPILLQHWENKDPAMKIFGILPKSKGNRNYIQYMKSSKYCICAKGYEVNSPRVVEAILYECVPVILSDNFVPPFFEMLNWESFAVFVLEKDIPNLKNILLSIPQKRYLQMQMMVRKVQQHFLWHRSPVKYDIFHMVLHSIWYNRVFTARAR*

>Glyma06g08960.3   sequence type=predicted peptide   gene model=Glyma06g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQELWSIFQLERKRLFWLIGITVAIILAFQYLELPYGGVQPIVFSAENTPTSDSIRFQAADLPSESETFNNMTFFNKANSTDENAFEIANETRTSEEKGTVSNTGLITEPGRESSRSLGFDETNESSTVESIEISNNGSATEQTGKFGLSIYNNTISSSPSHAIIPTNLAPPLSPTEVSPNITSPMSSNDYDETDFAEEERFKPSKDEFNIVGNNSSINSVPKETKGSQIPLPEVTTISEMNELLLQNRASYRSMRPRWSSAVDQELLQARLEIENAPIVNNVENLYAPLFRNISRFKRSYELMEKTLKVYVYREGDKPIMHSPYLLGIYASEGWFMRLMEASKQFVTKDPKKAHLFYLPFSSRMLEETLYVPNSHSSRNLIQYLKNYVDMIAGKHRFWNRTGGADHFLVACHDWAPTETRQHMARCLRALCNADVKEGFVLGKDISLPETYVRNAQKPTRNIGGNRVSKRKTLAFFAGGMHGYVRPILLQHWENKDPAMKIFGILPKSKGNRNYIQYMKSSKYCICAKGYEVNSPRVVEAILYECVPVILSDNFVPPFFEMLNWESFAVFVLEKDIPNLKNILLSIPQKRYLQMQMMVRKVQQHFLWHRSPVKYDIFHMVLHSIWYNRVFTARAR*

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