Glyma06g08944 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g08944): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g08944): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g08944

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6519116
stop:	6523796
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08944

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63520	AT	Annotation by Michelle Graham. TAIR10: carotenoid cleavage dioxygenase 1 \| chr3:23452940-23455896 FORWARD LENGTH=538	SoyBase	E_val: 2.00E-61	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016118	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid catabolic process	SoyBase	N/A	ISS
GO:0016121	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene catabolic process	SoyBase	N/A	ISS
GO:0016124	GO-bp	Annotation by Michelle Graham. GO Biological Process: xanthophyll catabolic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0044242	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular lipid catabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0045549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity	SoyBase	N/A	ISS
KOG1285	KOG	Beta, beta-carotene 15,15'-dioxygenase and related enzymes	JGI		ISS
PTHR10543	Panther	CARTENOID OXYGENASE	JGI		ISS
PTHR10543:SF1	Panther	9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED	JGI		ISS
PF03055	PFAM	Retinal pigment epithelial membrane protein	JGI		ISS
UniRef100_B9RRX7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase, putative n=1 Tax=Ricinus communis RepID=B9RRX7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A317	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A317 related cluster n=1 Tax=unknown RepID=UPI000233A317	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08944

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08944 not represented in the dataset	Glyma06g08944 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08944

Paralog	Evidence	Comments
Glyma04g08854	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08944 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g085000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08944

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08944

Limit To All Plant Sequences

>Glyma06g08944.2   sequence type=transcript   gene model=Glyma06g08944   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGTTAATGGAAACACACATGGCATTGGCAACTTCATACATGACTCTTGCACCTAAATATTGCTGCGTTCAGAAACGATCCTTCATCGTAACTTCAGGACTTTCCTCCGCCTTCAAGCCGATCTTAAGAGCGTTGCCTCAAATTCCGCGGCAAATTGATGCTTCCAAAACCTTCACAGACATCAAATCGAAATTTCTTAACGCTGTTGTGGATTCAGCATTTGAGTTTGTCGACCAGCTTGTGCTTCCATCTCAGAATAACTTTGCTCCGGTGGAGGAATTAGGGGAACCCGTGGCTATCACTTATATTGAAGGTGACATACCAGATCACTTTCCAGAGGGTGTCTTCATTAGAAATGGACCAAACCCACTCTTTGGAGGATTGAAATCATCGAAGTCTATCTTGGGGAGGACAAATAGCGTTTGGGTGGAAGGAGAAGGAATGCTTCATGCTTTATATTTCAAAAGGGAAAGTGACAACGGGTGCTGCACCATCGTCTACAACAACAGATACGTTGAAACTGAAACATACAAGCTTGAGAAACAAAGTATCAAGCCTTTGTTTCTCCCTGCTGTAAAAGGAGATACATTCGCCGTTTTGTCTTCTATGCTTCTTAACGGGCTGAGATTTGGACAACTGAATAAAGATTATAGCAACACCAATGTGTTTGAGCATTCAGGCAAGTTCTACTCGGTTTCGGAGAATCACATCCCGCAAGAAATAGACATCTTCACACTAAATACTTTGAAATACTGGGATGTCAATGGAGCATGGAATCGTCCTTTCGCCAGTCACCCCAAGAAAGTTCCAGGCACAGGAGAGCTTGTTATTTTTGGGGTAGATGCAACTAAACCTTATCTTGAAATTGGAATAGTTTCTGCTGATGGAAAGGAATTGGTTCATAAAGAAGACATAAAACTAGACAGATGCTCTTTATGCCATGATATAGGTATCACAAGCAGGTATATAGTGATATTGGATCTTCCACTGATTGTAGATTCAAACAGACTACTTAAAAGAGGCCCATTAATCAAGTATGAGAAGGAGGAATATGCCAGGATTGGGATAATGCCACTCTATGGTGATGAAAACTCAATCCAGTGGTTTGAGGTGGAACCTAATAGCACATTTCATATCATCAATTCCTTTGAGGATGGTCATGAGGTTGTGTTGTGGGGTTGTAGAGCATTAGATTCAATAATTCCAGGACCAGAAGATGGTCTAAATGAATCTAAATTGTTCTCTCGGTGTTATGAATGGCGATTAAACATGAAAAGTGGGGAGGTTAAGGAAAAATATCTCACTGGACCAGAAAAGTTTATGGATTTTCCAGTAATCAATGCAAGTTTTACAGGAATAAAGAATAGATACGGATACACCCAAGTGGTTGATCCCGCTGCAAGTTATTCTATATTCCTAAATATGGAGCTTTAGCGAAGCTATACTTTGGAGAACCATGTTCAGAATTCCCTGTGGGAGAGACACAACAAGAAGAGCTTATAAGGGTGGAATACCATACGTTTGAAAGGAATGTATTTTGCACTGGATCTGCCTTTGTCCCTAAAGAAGGTGGTATTGAAGAAGATGATGGTTGGATAATCACTTTTGTTCACAATGAAGATACCGGCATATCTCAAGTTCATATAATTGACACAAAGAAGTTTTCTGGCGAGGCAGTTGCCAAAATTACCATGCCTTTCAGAGTTCCATATGGATTTCACGGAGCTTTCATGCCAATCTCCTTTTAGATGCCGTAGGATTGTGATTTGTGTTGTCTGTATTAATTTGCAACTCTAGTCACTAATGTTGATGGCTGATGTGTATCATGCTATTATCTACTTAGTACGGTTATTTAAAATAAATAAAAAAGGGTAAATTATATT

Coding sequences of Glyma06g08944

Limit To All Plant Sequences

>Glyma06g08944.1   sequence type=CDS   gene model=Glyma06g08944   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACACACATGGCATTGGCAACTTCATACATGACTCTTGCACCTAAATATTGCTGCGTTCAGAAACGATCCTTCATCGTAACTTCAGGACTTTCCTCCGCCTTCAAGCCGATCTTAAGAGCGTTGCCTCAAATTCCGCGGCAAATTGATGCTTCCAAAACCTTCACAGACATCAAATCGAAATTTCTTAACGCTGTTGTGGATTCAGCATTTGAGTTTGTCGACCAGCTTGTGCTTCCATCTCAGAATAACTTTGCTCCGGTGGAGGAATTAGGGGAACCCGTGGCTATCACTTATATTGAAGGTGACATACCAGATCACTTTCCAGAGGGTGTCTTCATTAGAAATGGACCAAACCCACTCTTTGGAGGATTGAAATCATCGAAGTCTATCTTGGGGAGGACAAATAGCGTTTGGGTGGAAGGAGAAGGAATGCTTCATGCTTTATATTTCAAAAGGGAAAGTGACAACGGGTGCTGCACCATCGTCTACAACAACAGATACGTTGAAACTGAAACATACAAGCTTGAGAAACAAAGTATCAAGCCTTTGTTTCTCCCTGCTGTAAAAGGAGATACATTCGCCGTTTTGTCTTCTATGCTTCTTAACGGGCTGAGATTTGGACAACTGAATAAAGATTATAGCAACACCAATGTGTTTGAGCATTCAGGCAAGTTCTACTCGGTTTCGGAGAATCACATCCCGCAAGAAATAGACATCTTCACACTAAATACTTTGAAATACTGGGATGTCAATGGAGCATGGAATCGTCCTTTCGCCAGTCACCCCAAGAAAGTTCCAGGCACAGGAGAGCTTGTTATTTTTGGGGTAGATGCAACTAAACCTTATCTTGAAATTGGAATAGTTTCTGCTGATGGAAAGGAATTGGTTCATAAAGAAGACATAAAACTAGACAGATGCTCTTTATGCCATGATATAGGTATCACAAGCAGGTATATAGTGATATTGGATCTTCCACTGATTGTAGATTCAAACAGACTACTTAAAAGAGGCCCATTAATCAAGTATGAGAAGGAGGAATATGCCAGGATTGGGATAATGCCACTCTATGGTGATGAAAACTCAATCCAGTGGTTTGAGGTGGAACCTAATAGCACATTTCATATCATCAATTCCTTTGAGGATGGTCATGAGGTTGTGTTGTGGGGTTGTAGAGCATTAGATTCAATAATTCCAGGACCAGAAGATGGTCTAAATGAATCTAAATTGTTCTCTCGGTGTTATGAATGGCGATTAAACATGAAAAGTGGGGAGGTTAAGGAAAAATATCTCACTGGACCAGAAAAGTTTATGGATTTTCCAGTAATCAATGCAAGTTTTACAGGAATAAAGAATAGATACGGATACACCCAAGTGGTTGATCCCGCTGCAAGTTATTCTGCAGATATTCCTAAATATGGAGCTTTAGCGAAGCTATACTTTGGAGAACCATGTTCAGAATTCCCTGTGGGAGAGACACAACAAGAAGAGCTTATAAGGGTGGAATACCATACGTTTGAAAGGAATGTATTTTGCACTGGATCTGCCTTTGTCCCTAAAGAAGGTGGTATTGAAGAAGATGATGGTTGGATAATCACTTTTGTTCACAATGAAGATACCGGCATATCTCAAGTTCATATAATTGACACAAAGAAGTTTTCTGGCGAGGCAGTTGCCAAAATTACCATGCCTTTCAGAGTTCCATATGGATTTCACGGAGCTTTCATGCCAATCTCCTTTTAG

>Glyma06g08944.2   sequence type=CDS   gene model=Glyma06g08944   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACACACATGGCATTGGCAACTTCATACATGACTCTTGCACCTAAATATTGCTGCGTTCAGAAACGATCCTTCATCGTAACTTCAGGACTTTCCTCCGCCTTCAAGCCGATCTTAAGAGCGTTGCCTCAAATTCCGCGGCAAATTGATGCTTCCAAAACCTTCACAGACATCAAATCGAAATTTCTTAACGCTGTTGTGGATTCAGCATTTGAGTTTGTCGACCAGCTTGTGCTTCCATCTCAGAATAACTTTGCTCCGGTGGAGGAATTAGGGGAACCCGTGGCTATCACTTATATTGAAGGTGACATACCAGATCACTTTCCAGAGGGTGTCTTCATTAGAAATGGACCAAACCCACTCTTTGGAGGATTGAAATCATCGAAGTCTATCTTGGGGAGGACAAATAGCGTTTGGGTGGAAGGAGAAGGAATGCTTCATGCTTTATATTTCAAAAGGGAAAGTGACAACGGGTGCTGCACCATCGTCTACAACAACAGATACGTTGAAACTGAAACATACAAGCTTGAGAAACAAAGTATCAAGCCTTTGTTTCTCCCTGCTGTAAAAGGAGATACATTCGCCGTTTTGTCTTCTATGCTTCTTAACGGGCTGAGATTTGGACAACTGAATAAAGATTATAGCAACACCAATGTGTTTGAGCATTCAGGCAAGTTCTACTCGGTTTCGGAGAATCACATCCCGCAAGAAATAGACATCTTCACACTAAATACTTTGAAATACTGGGATGTCAATGGAGCATGGAATCGTCCTTTCGCCAGTCACCCCAAGAAAGTTCCAGGCACAGGAGAGCTTGTTATTTTTGGGGTAGATGCAACTAAACCTTATCTTGAAATTGGAATAGTTTCTGCTGATGGAAAGGAATTGGTTCATAAAGAAGACATAAAACTAGACAGATGCTCTTTATGCCATGATATAGGTATCACAAGCAGGTATATAGTGATATTGGATCTTCCACTGATTGTAGATTCAAACAGACTACTTAAAAGAGGCCCATTAATCAAGTATGAGAAGGAGGAATATGCCAGGATTGGGATAATGCCACTCTATGGTGATGAAAACTCAATCCAGTGGTTTGAGGTGGAACCTAATAGCACATTTCATATCATCAATTCCTTTGAGGATGGTCATGAGGTTGTGTTGTGGGGTTGTAGAGCATTAGATTCAATAATTCCAGGACCAGAAGATGGTCTAAATGAATCTAAATTGTTCTCTCGGTGTTATGAATGGCGATTAAACATGAAAAGTGGGGAGGTTAAGGAAAAATATCTCACTGGACCAGAAAAGTTTATGGATTTTCCAGTAATCAATGCAAGTTTTACAGGAATAAAGAATAGATACGGATACACCCAAGTGGTTGATCCCGCTGCAAGTTATTCTATATTCCTAAATATGGAGCTTTAG

Predicted protein sequences of Glyma06g08944

Limit To All Plant Sequences

>Glyma06g08944.1   sequence type=predicted peptide   gene model=Glyma06g08944   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METHMALATSYMTLAPKYCCVQKRSFIVTSGLSSAFKPILRALPQIPRQIDASKTFTDIKSKFLNAVVDSAFEFVDQLVLPSQNNFAPVEELGEPVAITYIEGDIPDHFPEGVFIRNGPNPLFGGLKSSKSILGRTNSVWVEGEGMLHALYFKRESDNGCCTIVYNNRYVETETYKLEKQSIKPLFLPAVKGDTFAVLSSMLLNGLRFGQLNKDYSNTNVFEHSGKFYSVSENHIPQEIDIFTLNTLKYWDVNGAWNRPFASHPKKVPGTGELVIFGVDATKPYLEIGIVSADGKELVHKEDIKLDRCSLCHDIGITSRYIVILDLPLIVDSNRLLKRGPLIKYEKEEYARIGIMPLYGDENSIQWFEVEPNSTFHIINSFEDGHEVVLWGCRALDSIIPGPEDGLNESKLFSRCYEWRLNMKSGEVKEKYLTGPEKFMDFPVINASFTGIKNRYGYTQVVDPAASYSADIPKYGALAKLYFGEPCSEFPVGETQQEELIRVEYHTFERNVFCTGSAFVPKEGGIEEDDGWIITFVHNEDTGISQVHIIDTKKFSGEAVAKITMPFRVPYGFHGAFMPISF*

>Glyma06g08944.2   sequence type=predicted peptide   gene model=Glyma06g08944   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METHMALATSYMTLAPKYCCVQKRSFIVTSGLSSAFKPILRALPQIPRQIDASKTFTDIKSKFLNAVVDSAFEFVDQLVLPSQNNFAPVEELGEPVAITYIEGDIPDHFPEGVFIRNGPNPLFGGLKSSKSILGRTNSVWVEGEGMLHALYFKRESDNGCCTIVYNNRYVETETYKLEKQSIKPLFLPAVKGDTFAVLSSMLLNGLRFGQLNKDYSNTNVFEHSGKFYSVSENHIPQEIDIFTLNTLKYWDVNGAWNRPFASHPKKVPGTGELVIFGVDATKPYLEIGIVSADGKELVHKEDIKLDRCSLCHDIGITSRYIVILDLPLIVDSNRLLKRGPLIKYEKEEYARIGIMPLYGDENSIQWFEVEPNSTFHIINSFEDGHEVVLWGCRALDSIIPGPEDGLNESKLFSRCYEWRLNMKSGEVKEKYLTGPEKFMDFPVINASFTGIKNRYGYTQVVDPAASYSIFLNMEL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain