Glyma06g08930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6510347
stop:	6512362
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20030	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr2:8647813-8648985 FORWARD LENGTH=390	SoyBase	E_val: 6.00E-66	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RS17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RS17_RICCO	SoyBase	E_val: 1.00E-87	ISS
UniRef100_I1K9D1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9D1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08930

Paralog	Evidence	Comments
Glyma04g08847	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g084800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08930

Limit To All Plant Sequences

>Glyma06g08930.1   sequence type=CDS   gene model=Glyma06g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTAACACCCTCAAGTTCAACCCCTTTAAGAACCGTTTGCTAATAATGTTCATGCTGGTTCTTTCTCTCCCCTTCAATGTTCAATCCCAAGCCAAAGATAGTGAAGAACAGAACCTGGCAGAACTCCCTCAAACGGTTCATCCAAGCAAGGGAATAGTAATAGCAGTTCTCTCCACAATGTTTGCCATAACATTACTCTTACTTCTCTATGTTAAATTCTGCCGAACTATCCCTCATGAACTCCTTAGGCAAAACTCAAATCTCCAAAACTTTCAGGGCCTAACTCGATCAAGGTCTAGAGTTTCTGGGATTGACAAACAAGTAGTTGAAACACTTCCTTTCTTCAAGTTCTCTTCCCTCAAGGGTTCCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAGACTCTAAGACTTCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCTACGTGCCCTCTTTGTAGACGCAGGGTTGAAGCAGGGGACATTAAAAACCTCAACTTTTCATTAAGCTCGCGGTTCCTCCGAGTTCCTTCAAATCTCACGGAGGATCCAAACCTTGAAATCTTTGTTCACAGAGAGCCATCTCATGGAGGGTCAGCATCGATCCAAAGGTCATATTTACCCTTAGACCAGCGGTGTCGAGGATCATCGAGAAGAGGCTTTTGGGACGTGGGCAAGTGCAAGAAACAAGAACTACTGCTTATTGATGATAGCAGTTCTATTGGTGGGACAAGAAAGTGGAACAAACCGGTGCACGTGATGAATCATAAGATAGTTATCTCTAATGTTTTTACGAGGAGCAGGTGGAGTGATCTTAATGCTTCGGACCTGTTGTCATTGAACAGTGAGATGCTTAATGATGTTTGCAGTGGGAGATTCTGTTTGTGTCCTTTGGAATCCAGCGACGACAGCGGAAATTTTCATGGGATTTCGAGTTCTAATGAGGAAGAAAACTCGTTTACGGCACTGAATAGTCCTGCGGAGAAGAGGTGCATGTCTGAGAGGTTTACACAAAAGGGGAAGGAGAATAGGATCAGAGAATGTGTGACATCTAATGGGGCCAGTGAGAGGCTGTGGAAGGTTTGGTTGCCAATTGCGCGAAGAACGGTCCAATGGTTTGCGATACAAGAAAGGAATTCGGTTGAATTAGAACACAAAACCTTAGCTTCAAATGTCTGA

Predicted protein sequences of Glyma06g08930

Limit To All Plant Sequences

>Glyma06g08930.1   sequence type=predicted peptide   gene model=Glyma06g08930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCNTLKFNPFKNRLLIMFMLVLSLPFNVQSQAKDSEEQNLAELPQTVHPSKGIVIAVLSTMFAITLLLLLYVKFCRTIPHELLRQNSNLQNFQGLTRSRSRVSGIDKQVVETLPFFKFSSLKGSKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNFSLSSRFLRVPSNLTEDPNLEIFVHREPSHGGSASIQRSYLPLDQRCRGSSRRGFWDVGKCKKQELLLIDDSSSIGGTRKWNKPVHVMNHKIVISNVFTRSRWSDLNASDLLSLNSEMLNDVCSGRFCLCPLESSDDSGNFHGISSSNEEENSFTALNSPAEKRCMSERFTQKGKENRIRECVTSNGASERLWKVWLPIARRTVQWFAIQERNSVELEHKTLASNV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain