SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08902

Feature Type:gene_model
Chromosome:Gm06
Start:6493496
stop:6496292
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08902
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67280AT Annotation by Michelle Graham. TAIR10: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 SoyBaseE_val: 5.00E-142ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0004462GO-mf Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG2943 KOG Predicted glyoxalase JGI ISS
PTHR10374Panther LACTOYLGLUTATHIONE LYASE JGI ISS
PTHR10374:SF0Panther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) JGI ISS
PF00903PFAM Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JGI ISS
UniRef100_G7ZWI4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase n=1 Tax=Medicago truncatula RepID=G7ZWI4_MEDTR SoyBaseE_val: 2.00E-159ISS
UniRef100_UPI000233A314UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A314 related cluster n=1 Tax=unknown RepID=UPI000233A314 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08902
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08902 not represented in the dataset
Glyma06g08902 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08902
ParalogEvidenceComments
Glyma04g08820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08902 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g084500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08902
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08902
>Glyma06g08902.1   sequence type=CDS   gene model=Glyma06g08902   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCCTTAATGTTACCAGCTGCTTCAATGCTGAGACCATGTACCACTTTATCATCATCATGTGCTTCATCAAGAAGACTTGCTCTCTTTCACCTTGTCTCCACTGGTGGCATTGCTCTCCCACAAGCTCAGTTATTTGGTGCAGAAAAAATAGCCCAACCAGAGAAGAATTTGTTTGACTGGGTCAAAAATGACAACAGAAGGTTTCTCCATGTTGTGTACCGTGTTGGAGACTTGGAGAAGACTATAAATATAAATGTGTGTGAAATTCGATTCGGTGATGTTGTATGCAATTTGATGACATTGTTGGGGTGCTGGTTCTACACTGAATGCCTTGGCATGAAGCTATTGAGAAAACGTGATATACCAGAAGACAGATATTCTAATGCTTTTCTTGGATATGGGCCTGAAGAGTCCAATTTTACAGTTGAACTTACTTACAATTATGGAGTGGATAACTATGATATTGGAAGTGGCTTTGGTCATTTTGGTGTTGCAGGAAGGTTAATTACAAGGGAACCAGGGCCTGTTAAAGATGGCAGTGCAGTAATTGCACTCATTGAAGATCCTGATGGCTATAAGTTTGAACTTTTGGAGAGAAGACCTACATCTGAACCCCTATGCCAAGTGATGCTTCGAGTAGGTGATATTGATCGTGCTGCTGGAATGAAACTTCTCCGCAAGAGGGACAACCCTGAGCAGAAGTACACAGTAGCTTTTATGGGCTATGGTCCTGAATACATGAATAGTGTTCTAGAACTGACATATAACTATGGCGTCACTAATTATGACAAAGGAAATGGTTATGCACAGATTGCCATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTATGTGGAAGGAAGATTATCCGTGAACCTGGGCCCTTGCCAGGTATCAACACCAAGATTGTAGCTTGCCTGGACCCTGATGGTTGGAAATTGGCATTTGTTGATAATGTTGATTTTCTGAAGGAATTAGAGTGA
Predicted protein sequences of Glyma06g08902
>Glyma06g08902.1   sequence type=predicted peptide   gene model=Glyma06g08902   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSLMLPAASMLRPCTTLSSSCASSRRLALFHLVSTGGIALPQAQLFGAEKIAQPEKNLFDWVKNDNRRFLHVVYRVGDLEKTININVCEIRFGDVVCNLMTLLGCWFYTECLGMKLLRKRDIPEDRYSNAFLGYGPEESNFTVELTYNYGVDNYDIGSGFGHFGVAGRLITREPGPVKDGSAVIALIEDPDGYKFELLERRPTSEPLCQVMLRVGDIDRAAGMKLLRKRDNPEQKYTVAFMGYGPEYMNSVLELTYNYGVTNYDKGNGYAQIAIGTNDVYKTAEAIKLCGRKIIREPGPLPGINTKIVACLDPDGWKLAFVDNVDFLKELE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo