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Report for Sequence Feature Glyma06g08887

Feature Type:gene_model
Chromosome:Gm06
Start:6489380
stop:6493551
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08887
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22810AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr3:8068595-8071559 FORWARD LENGTH=472 SoyBaseE_val: 4.00E-75ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
GO:0035091GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding SoyBaseN/AISS
PTHR24730Panther FAMILY NOT NAMED JGI ISS
PTHR24730:SF7Panther JGI ISS
PF05703PFAM Plant protein of unknown function (DUF828) JGI ISS
PF08458PFAM Plant pleckstrin homology-like region JGI ISS
UniRef100_B9RS23UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ice binding protein, putative n=1 Tax=Ricinus communis RepID=B9RS23_RICCO SoyBaseE_val: 2.00E-142ISS
UniRef100_UPI0002339C70UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339C70 related cluster n=1 Tax=unknown RepID=UPI0002339C70 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08887
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08887 not represented in the dataset
Glyma06g08887 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08887
ParalogEvidenceComments
Glyma04g08810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08887 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g084400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08887
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08887
>Glyma06g08887.1   sequence type=CDS   gene model=Glyma06g08887   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGCACCTAACTCGTTTTCAATTTCAGTGAGCCCGAGCGCCTCTAACTCTATATGCTTAGTTCATCAGTTGGAGAACATAGAAGAGAATGCTCCTGCAGATTGGCCTGCATCATCCTGTCCCCCTCCTGATACTCCAACTGAATCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCAGCCATGGAACTCTCCAAAGCACTGCATAGCACCAACAATTCGATCTCCACTGGTATAGAGATGCCACTTTCATGCCCTTCAGGCCACCAATTTGATACCAAGTGTTCCACCGCTTCAAAAGATTTATCTAACGGGTGTTTCCCTCCATTTTCGCCAAAAGACAGTAATGAAAAGAAGGATTTACTTTTACTCCATCAAGCACTCAATCCAGAATTCCTTTCCAGTCAAAATTTGCTCAGAAATGGGCTTTACAGGAGCTTGCTAAGAGGGAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAGCACGAAATTAGGACCCATAATGCTCATTTACACGCTGCAGTATCTGTGGCTGGTGTTGCTGCCGCTATTGCATCAGTTGCAGCTTCAATGGCATCGCCTGAAATGCCTTACGCAAACCAAAAGAACCCTCCCCTGGCTTCTGCTGCAATTGCATCTGCAGCGGCTTTAGTAGCCTCTCACTGCATCGAGATTGCAGAAGATATGGGGGCTGAGCATGACCAAATCTTAACAGTAGTCAACTCTGCGATTAATGCAAAAACTAATGGAGATATTATGACTTTAACAGCTGGAGCAGCCACAGCCTTGCGAGGAGCGGCTACTCTAAAGGCAAGGCTGCAGAAGGGGCCTGGAGCTACTGCAATTCCTCTAGCTGAGGAAAAGTGTAATGAAAGCAAAGAAGCAAACATCTTGACAGCACTGGACTACGTCTTTAGAGGTGGAGAACTTTTCAAACGTACAAGAAAAGGAGATCTTCACTGGAAGCAAGTGTCTTTCAATATAAATTCAAATTTGCAGGTTGTCATCAAAATGAAAAGCAAGCATATGGCAGGAACATTCACGAAAAAGAAGAAATATATAGTCACCGGAGTTTGCAATGATATCCCAGTTTGGCCCGGAAGGGAGAAGGAAGACATCAATGAAAAGAGGGCATATTTTGGAATAAAAACAAAAGACAGGACAATAGAATTTGAATGTGTAAGTAAAGGAGACAAACAGTTCTGGCTTGAGGGGATCCAGTATATGTTGAATTGCCGTGTCAAAGTAACAATATAA
Predicted protein sequences of Glyma06g08887
>Glyma06g08887.1   sequence type=predicted peptide   gene model=Glyma06g08887   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAPNSFSISVSPSASNSICLVHQLENIEENAPADWPASSCPPPDTPTESMEFLARSWSLSAMELSKALHSTNNSISTGIEMPLSCPSGHQFDTKCSTASKDLSNGCFPPFSPKDSNEKKDLLLLHQALNPEFLSSQNLLRNGLYRSLLRGRTMGRWLKDQKERKKHEIRTHNAHLHAAVSVAGVAAAIASVAASMASPEMPYANQKNPPLASAAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATAIPLAEEKCNESKEANILTALDYVFRGGELFKRTRKGDLHWKQVSFNINSNLQVVIKMKSKHMAGTFTKKKKYIVTGVCNDIPVWPGREKEDINEKRAYFGIKTKDRTIEFECVSKGDKQFWLEGIQYMLNCRVKVTI*






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