Glyma06g08880 - SoyBase

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Report for Sequence Feature Glyma06g08880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6482850
stop:	6488792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28880	AT	Annotation by Michelle Graham. TAIR10: casein kinase I-like 3 \| chr4:14251351-14254048 FORWARD LENGTH=415	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1163	KOG	Casein kinase (serine/threonine/tyrosine protein kinase)	JGI		ISS
PTHR11909	Panther	CASEIN KINASE-RELATED	JGI		ISS
PTHR11909:SF18	Panther	CASEIN KINASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7ZWI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase I isoform delta-like protein n=1 Tax=Medicago truncatula RepID=G7ZWI6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9C5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08880

Paralog	Evidence	Comments
Glyma04g08800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g084300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08880

Limit To All Plant Sequences

>Glyma06g08880.1   sequence type=CDS   gene model=Glyma06g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGGGTCATCGGAGGGAAGTTTAAGATTGGTCGGAAAATCGGAAGCGGTTCGTTCGGAGAAATTTATATTGCATCAAATATCGATACCTCTGAGATTGTCGCCATCAAGATGGAAAGCAAGAAGACCAAGCATCCGCAGCTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGAAAGTGGTGTTCCAAGTATGAAGTGGTGTGGCACAGATGGAGACAATAATGTTCTAGTTATTGATCTTTTGGGGCGGAGTCTTGAGGACTTTTTTGTCTATTGCGGGAGAAAGTTTTCATTAAAAACGGTTTTGATGTTGGCCGATCAGATGCTGACAAGAATAGAGTACATGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAATCAAATCAGGTTTATATTATTGATTTTGGACTAGCGAAAAGATACAGGGACCCTAACACAAATAAACATATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCACGTTATGCAAGTTGCAACACTCACATGGGAATTGAGCAAAGTTGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCTACCAAAAAGGAAAAATATGACAATATTTGTGAGAAGAAATTATCAACTACCATTGAGATGCTTTGCAAGTCGTATCCTGCGGAGTTTGCTACTTACTTTCACTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACCTGAAGCGCTTGTTCCGTGATTTGTTCAAAAGAGAAGGATATGATTCCGACTTTATATTTGACTGGACCATCCTAAAATATCAGCAGGTGCAACAGACAAATAAACAAAATCAATCATCTCCTTCAACAGCAGTGCCTAGCAGTCTAGAACCAGTAGTTATGGAAAAGCATAAAGGAGTAAATGATTCAGCTCATGTTACTGTAACAAAAATGTTGGCCAATCTTGAACGTCCAAGTGCACGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGGATGCCAAGAATCATACTGAGAAACATGGTGTGAACAATAGTCCATCTACTTCCTCTGCCATTCCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGCCCACAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATGCTCGTGTTTCAAGCAGCTGGATTCCTTCGCTACGCCGAATTTCTTCTGCCAAATAG

Predicted protein sequences of Glyma06g08880

Limit To All Plant Sequences

>Glyma06g08880.1   sequence type=predicted peptide   gene model=Glyma06g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERVIGGKFKIGRKIGSGSFGEIYIASNIDTSEIVAIKMESKKTKHPQLLYEAKLYSILQGESGVPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYMHSKGFLHRDIKPDNFLMGLGRKSNQVYIIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSCRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDNICEKKLSTTIEMLCKSYPAEFATYFHYCQSLTFDQHPDYGYLKRLFRDLFKREGYDSDFIFDWTILKYQQVQQTNKQNQSSPSTAVPSSLEPVVMEKHKGVNDSAHVTVTKMLANLERPSARARVQPKPSNVRNLDAKNHTEKHGVNNSPSTSSAIPKSSTENVSKPERPTGTSNLGRVFGSNARVSSSWIPSLRRISSAK*

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