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Report for Sequence Feature Glyma06g08850

Feature Type:gene_model
Chromosome:Gm06
Start:6460802
stop:6466636
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32770AT Annotation by Michelle Graham. TAIR10: tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | chr4:15804981-15807790 FORWARD LENGTH=488 SoyBaseE_val: 0ISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009915GO-bp Annotation by Michelle Graham. GO Biological Process: phloem sucrose loading SoyBaseN/AISS
GO:0010189GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin E biosynthetic process SoyBaseN/AISS
GO:0010264GO-bp Annotation by Michelle Graham. GO Biological Process: myo-inositol hexakisphosphate biosynthetic process SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0016122GO-bp Annotation by Michelle Graham. GO Biological Process: xanthophyll metabolic process SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0009976GO-mf Annotation by Michelle Graham. GO Molecular Function: tocopherol cyclase activity SoyBaseN/AISS
UniRef100_G7ZWJ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tocopherol cyclase n=1 Tax=Medicago truncatula RepID=G7ZWJ2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K9C2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9C2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08850
ParalogEvidenceComments
Glyma04g08750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g084100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08850
>Glyma06g08850.1   sequence type=CDS   gene model=Glyma06g08850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAAGCTCTGGGAGTCTCCTCTTTTGTCTCCCTCACTCCCTCTTCTTCCTTCTCTCAATCTCCACTTTCCCTCTTCAACGCGCCTCCTAGCTCGCAGTTTCTTCTCAGACACCGTTCCCATTGATAACAAGGAAAAGGAACAACTTGTAACTTCTGTCAAACCTACTTACTCCCCTACTCCTCCCAATCGTCACCTTCGAACTCCTCACAGCGGCTACCATTTCGATGGGACTACTCGCAAATTCTTCGAGGGTTGGTACTTCAAACTTTCCATTCCGGAACGGAGGCAGAGTTTTTGCTTCATGTACTCCGTCGAGAGCCCATCCTTTCGTAAACCACTGACGCCGCTCGAAGTGGCCCAATACGGCTCCAGGTTTACTGGTGTCGGTGCTCAAATTCTCGGTGCCGATGACAAATATATTTGTCAATTTTCTCCTGAATCACAATTCTTCTGGGGAAGTAGGCATGAACTAATGTTGGGGAACACTTTCGTGCCCAACCAAAATTCTAAACCTCCAAACAAGGAGGTTCCTCCTCAGGAATTTAATGATAGAGTGCTGGAAGGTTTTCAAGTCAGTCCCCTTTGGCATCAAGGTTTTATTCGCGATGATGGAAGGTCAAATTATGTAGAGACAGTAAAGACAGCTCGTTGGGAGTATAGTACGCGTCCTGTATATGGTTGGGGTGATGTTGGTTCCACGCAGAAGTCTACTGCTGGGTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCTGGTGGACTGTCAACAGGTTGGATAGAGTGGGATGGCAAGAGGATTGAGTTTGATAACGCTCCTTCTTATTCAGAAAAGAACTGGGGTGGAGGATTCCCAAGAAAATGGTTTTGGGTTCAATGTAATGTTTTTGAAGGGGCTAGTGGAGAAATTGCTCTTACAGCAGCTGGTGGATTGAGGCAAATTCCTGGAATTGCCGAGACCTTTGAAAATGCTGCATTGATTGGAATTCATTATGGTGGAATTTTTTATGAATTTGTGCCATGGAATGGTGTTGTTAACTGGGAAGTTACTACTTGGGGTTATTGGTTTATGTCAGCAGACAATGGCAGATATGTGGTTGAAATAGAAGCAACAACAGAGGATCCAGGTACAACATTGCGTGCTCCAACAGCAGAAGCCGGCTTGGCCCCTGCTTGTAAAGATACATGCTTCGGAGATCTAAAATTACAAATGTGGGAACGAAGATATGACGGCAGCAAGGGGAAGATCATATTGGACGTTTCAAGTAATATGGCAGCACTAGAAGTTGGAGGAGGTCCATGGTTTAACACTTGGAAGGGCAAGACATCAACTCCAGCAGCCCTTAGCCGTGTCCTTGAATTACCCATAGACGTAGAGGGCATTTTCAATCCTGTTCCTCTATTTAAACCGCCTGGCCTGTAG
Predicted protein sequences of Glyma06g08850
>Glyma06g08850.1   sequence type=predicted peptide   gene model=Glyma06g08850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKLWESPLLSPSLPLLPSLNLHFPSSTRLLARSFFSDTVPIDNKEKEQLVTSVKPTYSPTPPNRHLRTPHSGYHFDGTTRKFFEGWYFKLSIPERRQSFCFMYSVESPSFRKPLTPLEVAQYGSRFTGVGAQILGADDKYICQFSPESQFFWGSRHELMLGNTFVPNQNSKPPNKEVPPQEFNDRVLEGFQVSPLWHQGFIRDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGKRIEFDNAPSYSEKNWGGGFPRKWFWVQCNVFEGASGEIALTAAGGLRQIPGIAETFENAALIGIHYGGIFYEFVPWNGVVNWEVTTWGYWFMSADNGRYVVEIEATTEDPGTTLRAPTAEAGLAPACKDTCFGDLKLQMWERRYDGSKGKIILDVSSNMAALEVGGGPWFNTWKGKTSTPAALSRVLELPIDVEGIFNPVPLFKPPGL*






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