SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G11530 | AT | Annotation by Michelle Graham. TAIR10: embryonic flower 1 (EMF1) | chr5:3697140-3700930 FORWARD LENGTH=1096 | SoyBase | E_val: 1.00E-30 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010022 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem determinacy | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0070734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K27 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003690 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0003697 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_G7ZWE8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: EMBYO FLOWERING 1-like protein n=1 Tax=Medicago truncatula RepID=G7ZWE8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339C6D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339C6D related cluster n=1 Tax=unknown RepID=UPI0002339C6D | SoyBase | E_val: 0 | ISS |
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Glyma06g08787 not represented in the dataset |
Glyma06g08787 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g08680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g083500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g08787.1 sequence type=CDS gene model=Glyma06g08787 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCATATATTCACATTGATTCAATCTCTATCGATCTTGCCGATTCTGTTGGCAAGAGAGATGCAGGCAAATGTGAACATTTCTCAATACGTGGATATGTGTCTGAAATGCGCAGAAAAGACTGGAAAAATTGTTGGCCATTTCCAGAACATGAGTCTGACAAACAACCAACATTTCTGCCATTAGATGTACCAAAATATAGATGTCTGCATTGTCAGAACTCTGCACAAGAAGTTGCTGCCAAGGACATCCAGAGAGACGACCAAGCAGACTTTGATTGTTGCAGTACTGGATGCAGATCTGGTAGCAATTGCAATAACGCAGCTCTTAAGTCTGGTATTCAGCAAGATCCAATGCTTGACACTCTTGAGAGAAGAGAAATTGATCTTAATGCTACCCTGAGCTGTGTCAATGATTGCTTACCAAATAATGAGAAAGGCAAGAAAGCTGGAGTCGTACCTAGCAGAATAATTGACCTTGAGATTGGCTTGGAGGATAATCTCAATCACCAAGTAACTAGTGTTCCATCACCTAAAAATTATCCAGACCTCGCACCAGAAGTGCACACTATTAAGAAAGGTGAAGGTAATGAAGTTTCTTTTCCTGAGCTTGCTAGCAATTTGAAATGCTTGGGGAAGAATTCTGCTGAGATGTGTAACGGAGGAACACCTGCAGATAACCAATGCCAGAAAGATTTAATAAAAGCTTGCACAGTTTGGGGGAAAGTCACAACAGTAATAGAGGTGGACAATACAGACAATCACCCAACTGGACCTCCTCTTGAATCAGTTGCTTGTAATAATGCTGCACCTGCAGGAAGTGTGGACAATACGGTTGAAAATGATTTTCAGGATCATCATTCAGAAAAGTCACTTGGTTTGACTCGTAGGAGGCCTCGGAAGGTGCGCTTGATGGCTGACTTATTAAGTGACAATGGTGAACTGAAGACTGAGCAAATTTCTATGCAAGAATCTGTATCCCATGGTACTTCCAATGCCTCTGCAGCTTTGCAGGCACACTCAATTTTGCCAGGAAAGGTGGATATTCAAGGATGTTTGACTTTGACAAGCACAGGTCTTAGTAGAAAAAGGAAGTTTCCTCTGGATGAGGTACGGAGACCTGCAAGCATGTGTTTTCAGAGGGTCGAGAATGGAGTTCAGAACTCAGAGGGAGATGAAAAAACAACTGATACTGTTTTGGATACTAGATCCAATTCCAAAGATGTACCCGCGGGATTAGGTTTACAAGATGCCGCAAAGGGACAATGGAGTAGAACTGAAACCGAAAGAAGCCATATCATTGGCAAGAAGAAAAACAAAAGGATTCAAGTTGTAGATAATTGCTTGATTCCTGAGCAACCACAAGGACATCGAAGAGACAATGAAGACCCCGTGGATACTCTAGACAAGGCATATACATCTAAAACTAATTCTTCTAGATTAGCTCCTCGTGCATTCACAGGGAAAGGGATGGATAATTTTCCTATCCCCCCCCTAAGAATAGAAAATGAGTTCAATTTGTCCAAAGAAAAGGGGAAAATGCTGCAAACTGATGGGGAGATGGATTCTTTATCCTGGCAGAAAAATAGCATGCTTGTACAAGATTCCTGTGCATATTCAGGGGAAAAAGCCTGGTCTAATATGCCTGTAACAATTCCAATTCCTTCAGCCCAAGGGGCGCTAAAAGGAAAAGGACTGGAAGAGGGACTTCATCTTTCTCTAAACAATTATTTGGTGGATGCACATGTTTACAACAAAAAATGTATCCATCAAATTGAAAATCACTTACCTTTCTCAATGCCTTTTGAAGATAAAACTTCAAAAGTACCACAGCTTACTTGGAAGGACAGTGACACTAATGTTTTTGGAGGGCAAAATATTCCTTCCAAAAACCCAACAGCAAATGCTCATTCTGGAAAAGTAGTTCATTGTGAAGAAATTAATGGTGCAAGAAACGCACAAAAAACTGCTGAAGCTGTGGACCAACTAGGTTTTAAGAAAAGATACAGTGAACAAAAAGTGGAGGTGTCTGAGCAGGGAACACTTGATGATATACCTATGGAAATTGTGGAACTCTTGGCGAAGAATCAGTATGAGAGGTGTCTTCCTGATGTAGAAAATAGAAATTCCACATTAGAAAAACCCAGTCTTGGAAGGAAAGCACAGATGACAGGTGGCTCTACTGTACACAGAAAAGGGGGGATGAGCTTGTTAAAAGACAACCAAAAGGAGAAACCTCAGGGTAGACATAAGAAAAACAACATGGTCACAAGAGCAGAGAATGTGAAACCTAGCAAAAGAAAGACAGTTAATTATTTTTCTCCATTTGATGGAAACAATTTGGGCATGAATAGTATCTGTCCACCTCAATCCCCCTTTGGAATTGAAGTTTCCCAGTCCCAAAGGAAGCCATCAAGTGGATTCCAGTTTTCACCTATTGGTTCTAGTCAGCTTGGTAGTGCTCGAAGTTTCAGGTTGAACGGGGCTTATGAAGAGCGTGGATCTCCTAATGCTACTTATCAAGCCCCTGGAGGATGTAGCTTACACAAGAATATCCTACATCAGGATGAAGAAGCTTCTCGCATCTGGGCATCCCTGAGTTCAAATTCCCAAGGACATGATTTTCCCAAAAAGGTTGTTTCTTCTCAGCATCCTAGTAGTAGCATGGACATAACTTCACACCAATCTGGTGCATTTCAAAAGCAAAACATGAAGAGGGATATTGATCTAAACTACATGAATCTGAATGCTGCTGGACTAGAAAAGCTTAGTAGGAATACAGGTTCTGAAACCTTCAACAGGATGAATGGAGAATATTCATTTCCTTGCAAACATAGTGGAATGGAGCCTCATCAAAATTTGAGGGGATCTCTTGATTTGTATTCTAATGAAACAATACCAGCCATGCATTTACTAAGCCTTATGGATGCAGGCATGCAGTCCCGTACAGCCTTTGATGTGGGTGTCAGTTCTCAGATGCTTAAAAGGCCCTCTTATCCAGGTGATTGCAATACTAAGTTGGAGATTGGTACAACTAAGACTCCTGGTACCCTGAAAAGACCATCATCTGATTATTACAGCAGAAGCTTCTTATCAGATAAGCATGGCTGTTTTGCTGGCTCTCCAACCTTTGGTGCATCTTCATCAACACCGCATGATAAGAAATTAATAAGGGCTACTGGTTTCAACGGTCAAAATCCAACAAAGTCTGGAAAGAAAGAAAAGATGAAGAGCTCCAACTCTACCCTGCAGAATAAAGTTAGTAAGCAAATTAGCTGGCCTCGTAATGAAACCGAAACGTCACTGCAGTGCAAATTGGAAGTTAATGGCAATCATGAAACCCCTGTGCCATATAAAATCATCTCTGGAAACACATGTATGGTGAACAGGAATCCAGCTGATCTCACCATACCAGAAACAGGGAATATCTATATGATCAGAGGAGAAGATCTGAAATTCGAGAAGAGTTTTCCCAAAAACAAGCCTCGTTTCCCCATTCCATATGGATCCAAGCAGCAGAAGAATTTGAAGGGAACTAAAATGAAAGAACATTCAAAACATTGA
>Glyma06g08787.1 sequence type=predicted peptide gene model=Glyma06g08787 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSYIHIDSISIDLADSVGKRDAGKCEHFSIRGYVSEMRRKDWKNCWPFPEHESDKQPTFLPLDVPKYRCLHCQNSAQEVAAKDIQRDDQADFDCCSTGCRSGSNCNNAALKSGIQQDPMLDTLERREIDLNATLSCVNDCLPNNEKGKKAGVVPSRIIDLEIGLEDNLNHQVTSVPSPKNYPDLAPEVHTIKKGEGNEVSFPELASNLKCLGKNSAEMCNGGTPADNQCQKDLIKACTVWGKVTTVIEVDNTDNHPTGPPLESVACNNAAPAGSVDNTVENDFQDHHSEKSLGLTRRRPRKVRLMADLLSDNGELKTEQISMQESVSHGTSNASAALQAHSILPGKVDIQGCLTLTSTGLSRKRKFPLDEVRRPASMCFQRVENGVQNSEGDEKTTDTVLDTRSNSKDVPAGLGLQDAAKGQWSRTETERSHIIGKKKNKRIQVVDNCLIPEQPQGHRRDNEDPVDTLDKAYTSKTNSSRLAPRAFTGKGMDNFPIPPLRIENEFNLSKEKGKMLQTDGEMDSLSWQKNSMLVQDSCAYSGEKAWSNMPVTIPIPSAQGALKGKGLEEGLHLSLNNYLVDAHVYNKKCIHQIENHLPFSMPFEDKTSKVPQLTWKDSDTNVFGGQNIPSKNPTANAHSGKVVHCEEINGARNAQKTAEAVDQLGFKKRYSEQKVEVSEQGTLDDIPMEIVELLAKNQYERCLPDVENRNSTLEKPSLGRKAQMTGGSTVHRKGGMSLLKDNQKEKPQGRHKKNNMVTRAENVKPSKRKTVNYFSPFDGNNLGMNSICPPQSPFGIEVSQSQRKPSSGFQFSPIGSSQLGSARSFRLNGAYEERGSPNATYQAPGGCSLHKNILHQDEEASRIWASLSSNSQGHDFPKKVVSSQHPSSSMDITSHQSGAFQKQNMKRDIDLNYMNLNAAGLEKLSRNTGSETFNRMNGEYSFPCKHSGMEPHQNLRGSLDLYSNETIPAMHLLSLMDAGMQSRTAFDVGVSSQMLKRPSYPGDCNTKLEIGTTKTPGTLKRPSSDYYSRSFLSDKHGCFAGSPTFGASSSTPHDKKLIRATGFNGQNPTKSGKKEKMKSSNSTLQNKVSKQISWPRNETETSLQCKLEVNGNHETPVPYKIISGNTCMVNRNPADLTIPETGNIYMIRGEDLKFEKSFPKNKPRFPIPYGSKQQKNLKGTKMKEHSKH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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