Glyma06g08774 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08774

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6393896
stop:	6399620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08774

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29000	AT	Annotation by Michelle Graham. TAIR10: Tesmin/TSO1-like CXC domain-containing protein \| chr4:14293957-14296602 FORWARD LENGTH=603	SoyBase	E_val: 4.00E-123	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12446	Panther	TESMIN/TSO1-RELATED	JGI		ISS
PTHR12446:SF7	Panther	TSO1-RELATED	JGI		ISS
PF03638	PFAM	Tesmin/TSO1-like CXC domain	JGI		ISS
UniRef100_G7ZWG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lin-54-like protein n=1 Tax=Medicago truncatula RepID=G7ZWG4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A30F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A30F related cluster n=1 Tax=unknown RepID=UPI000233A30F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08774

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08774 not represented in the dataset	Glyma06g08774 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08774

Paralog	Evidence	Comments
Glyma04g08670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08774 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g083400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08774

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08774

Limit To All Plant Sequences

>Glyma06g08774.1   sequence type=CDS   gene model=Glyma06g08774   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAGAGCGAAACGGCGTCGGATTTAGCTCCGAGGAAATTGGTTCGCCAATTGAATTTCGCCGCCGTTTACGGAGATCCGTCGCACCTGAAACTGCCTCCACCGTCACCGTCACCGTCACCGCCACCGCCGTCGCATTCTCCGTTGCGATTGCAATTGGATTTGCTGCCGCCGGGGCAACGGCCGTGGTTATGTTCAGAGCCGCAGGAACAACAGGCGTGGTTATATTCACCGCGGCTGAAGCTAGTTTCGCCGGTTCGACGAATTCCGCACCCCGTGAAGAAGCTTCCGGTGAAGGTGTTGCAAGTGGCAAAGCCGAAGTCTCCTAGATCACAACCTCAATGTAATGTGGAATTGAAGGACACCACTCCAAAGAAACAGAAACAGTGTAACTGCAAAAATTCTAGATGCCTCAAGTTGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCTAGAAAGAAGAGATTCCAAGGAATGTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGATGAAAGAAGAGCAATTTTTCACAAAGATTATAATCTAGTTCACATCAAACAGGCAGCTAATGCTACCATTAGTCGAGTTGCTGGATCATCTGGCTATGGAACCCATTTAACACCCAAGAAGAGAAAAATTCATGAAATGTTTCCTGGAAAGTCAGCCATGGATCAAACTGATAACATTACTGCTCAATACCAACAGGAAATTGATCCTATGGCTTCATCGCCTTCATTTCTGTCAGATTCGTTTGTTTCTGACCCTTCCAACACAAGAATTTCAGCGTCTTCAAGATCTACATACCGGTCCGTATTGGCAGATTTCTTCCAGCCACAAAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCACAAGTAGCTGCTAAGACAAATGCAGAAATGATAGGCAAAGTAGACCAGCAAACAAAAACTGGGAACTTTGAAGCTTCTGTTGCTTCATCATCTAAATCACTGCAAGAAACTAGAGATGTCCACCAGCTTGTTTGTGATGATCACGTGAATAAAGATGAAGCAGATGCAGTTGATATTGCTAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGATGATATGATTTTTGGAAATAGTTCTGCAAATGGAGTTGCATGCAACAGCACTTTGCAAAACATGATTCAAAAGTCATCTAATTCTGATGGATGCACTGATGTTTGCAGAGAGCAGGAAAGGCTTATATTGACCAAGTTCTTGGACGTTCTTCGCGGACTCGTTACTCACGGTAGCATCAAAGAAACAATGTGCTCTTCATCGACCAAGAAAGGGGAGAGAAGCAAGAAAGAGCCTGCAGACAATGCCAATATTGGTGCTGAAACTAACGTTGGGAGAGAGAAGGGAATTCATAACAACTCCTTTGGCAATTACCTCATCCCATCTGTTACTAAAATATCCCAGACAAATTATGCCGTAACTAATGGACATGGTAATAATGATCTTTCGTTGACCTGA

Predicted protein sequences of Glyma06g08774

Limit To All Plant Sequences

>Glyma06g08774.1   sequence type=predicted peptide   gene model=Glyma06g08774   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQSETASDLAPRKLVRQLNFAAVYGDPSHLKLPPPSPSPSPPPPSHSPLRLQLDLLPPGQRPWLCSEPQEQQAWLYSPRLKLVSPVRRIPHPVKKLPVKVLQVAKPKSPRSQPQCNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPLERRDSKECEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAIFHKDYNLVHIKQAANATISRVAGSSGYGTHLTPKKRKIHEMFPGKSAMDQTDNITAQYQQEIDPMASSPSFLSDSFVSDPSNTRISASSRSTYRSVLADFFQPQNVKNLCSLFVVLSQVAAKTNAEMIGKVDQQTKTGNFEASVASSSKSLQETRDVHQLVCDDHVNKDEADAVDIANYNRPLSPETLALMCDEQDDMIFGNSSANGVACNSTLQNMIQKSSNSDGCTDVCREQERLILTKFLDVLRGLVTHGSIKETMCSSSTKKGERSKKEPADNANIGAETNVGREKGIHNNSFGNYLIPSVTKISQTNYAVTNGHGNNDLSLT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain