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Report for Sequence Feature Glyma06g08762

Feature Type:gene_model
Chromosome:Gm06
Start:6384648
stop:6388594
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08762
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59560AT Annotation by Michelle Graham. TAIR10: sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275 SoyBaseE_val: 1.00E-105ISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3131 KOG Uncharacterized conserved protein JGI ISS
PF07985PFAM SRR1 JGI ISS
UniRef100_G7IYV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein SENSITIVITY TO RED LIGHT REDUCED n=1 Tax=Medicago truncatula RepID=G7IYV5_MEDTR SoyBaseE_val: 8.00E-160ISS
UniRef100_UPI000233A30EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A30E related cluster n=1 Tax=unknown RepID=UPI000233A30E SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08762
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08762 not represented in the dataset
Glyma06g08762 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g08762 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g083300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08762
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g08762
>Glyma06g08762.2   sequence type=transcript   gene model=Glyma06g08762   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTTTCTTTTTTTTCTGCAGTTTTGTTACTCATTTAAAAAGTTATAGGAAAATTAATTTATATTTACTTTGAAGCTCCTTTCGCATTCAAGCGCCCCTAGCCTGTTCATTGTTCTGAACCCTAGTCTCTTCCTTATGCTTGTTCTTCCATTGAACCTTAGCCTCTTTGACATTCAAGCAACACCCTAGCTTGTTCTTCTTCCATTGAACCCGACGAGGTCTACTTCCCGGTTCGAACTGGCAGTTCATGAAGAAAGAGATTGGTCTCACTTCGAAAAAACCAAGTTAATGAGTTACTTATTTAGTTAGGTTAAGCTTTGAAGAAACCCAGTCAATAAGGTTTGTGTAGCGTTGAAGAGAGGTCGTGGGTTTGATATAAGCTTCTTTTGCTGCTGATGTTTGCTAATGGTGGTTCCAGGGAAGACGCAGGTCATAAATGAGTTGTTTGTGAACAACAACTGATACCTTATTAACTGGGCTGCAAACGGAATTTGGTATTGCATTCTGACGTTGAAGCAGTGTATCAAAGACGAGAATTACTGTATCTCAATGGCAGCTTCAGAGAAAACTCTAACAAACAAATGCACAACAAATGAAGGTTGGACTGTAGTTTTACCCCGTCGCAGCAGACAAAGAAGAAAAGCTACCAAATCTGGAGTTTTGGAGGAAAAACAAGAGCCATGGACTCCAACAGATTCTCAGACTGACCCAAGCAAAGAAGCAACATTGGTGCAGAAAATGGAAAGATGTATAAATAGGATTGAGGGATCTGAATTCTATCATACTTTCAGGGATCAAATTCAAACATCCGTTGTTGATTACTTCAATAGAGTTTTGGGCTCAGAGATAAAGATGCAAATGGTCATTTATGGTATTGGCAGCATCAAATTGTATGAGCCCCCTCGACTGCAGCTTAGTCTTGCAATATTGATGAGAAGAGATTTGAGTTGGATTGGAAACATAGAGGTATTTGATCCTATTCTTTCTGCAACTGAGTCTCGGGTTTTGGAAGCTCTTGGTTGTTCTGTCATGTCCATAAATGAGCATGGGAGGCGAGAGGCTCTAAAGCCAACAATGTTCTTCATGCCTCACTGTGAAGCAGAGCTATATAACAACCTGTTGCAAGCAAATTGGAAACTGAATCTCTTAAAAAACATGGTATTATTTGGGAACAGCTTTGAAACATATGAGCAGCACGTGTCACTGTGTAAGAACTCACCTATTCTTAACTCTATGGGGCATATTTTGGCTGCTCAAGGATTCACAAATGAATTTAGAATCCAAACAGTTTCAGATGATTATTATAATGCATTCCATGATTCAAGTTGGCATTTTTTCAGCCCTCTCCTTGAGACAGAGCTGCCTATTATCAATTCTTGATCGAGGGTATCTTATAAGCATAAATTCATTTAAAGGGATGTATATCCGTATCAACGCGGTTGTACATCATTTTGTCATAATTATTGATCTAGTGTAAGAGACTGTTACCCTCCCATGTCTTCTTATTTTTTCAAATATCCTAAGCTTATGTATGCTTTAACTGTCAACTTGTATATTGTTTTAAGTATGCTTGTTTATCTTTGCATTGTTGCACGTGTGGTCTGGGTCTGTGATGACCCTGTATCTAGTGTATGTGGATAATAGATGAATAGGAGGCGGTTTGGAGACTTCATATCTGGACGTAAAGATGCGATATTTGTTTTTGTTTTCTTTAAAGTTATGTATAGTGCTGATCGACTTATAATTTATGTAGTTTATTTTTATAGTGTGG
Coding sequences of Glyma06g08762
>Glyma06g08762.1   sequence type=CDS   gene model=Glyma06g08762   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTCAGAGAAAACTCTAACAAACAAATGCACAACAAATGAAGGTTGGACTGTAGTTTTACCCCGTCGCAGCAGACAAAGAAGAAAAGCTACCAAATCTGGAGTTTTGGAGGAAAAACAAGAGCCATGGACTCCAACAGATTCTCAGACTGACCCAAGCAAAGAAGCAACATTGGTGCAGAAAATGGAAAGATGTATAAATAGGATTGAGGGATCTGAATTCTATCATACTTTCAGGGATCAAATTCAAACATCCGTTGTTGATTACTTCAATAGAGTTTTGGGCTCAGAGATAAAGATGCAAATGGTCATTTATGGTATTGGCAGCATCAAATTGTATGAGCCCCCTCGACTGCAGCTTAGTCTTGCAATATTGATGAGAAGAGATTTGAGTTGGATTGGAAACATAGAGGTATTTGATCCTATTCTTTCTGCAACTGAGTCTCGGGTTTTGGAAGCTCTTGGTTGTTCTGTCATGTCCATAAATGAGCATGGGAGGCGAGAGGCTCTAAAGCCAACAATGTTCTTCATGCCTCACTGTGAAGCAGAGCTATATAACAACCTGTTGCAAGCAAATTGGAAACTGAATCTCTTAAAAAACATGGTATTATTTGGGAACAGCTTTGAAACATATGAGCAGCACGTGTCACTGTGTAAGAACTCACCTATTCTTAACTCTATGGGGCATATTTTGGCTGCTCAAGGATTCACAAATGAATTTAGAATCCAAACAGTTTCAGATGATTATTATAATGCATTCCATGATTCAAGTTGGCATTTTTTCAGCCCTCTCCTTGAGACAGAGCTGCCTATTATCAATTCTTGA

>Glyma06g08762.2   sequence type=CDS   gene model=Glyma06g08762   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTCAGAGAAAACTCTAACAAACAAATGCACAACAAATGAAGGTTGGACTGTAGTTTTACCCCGTCGCAGCAGACAAAGAAGAAAAGCTACCAAATCTGGAGTTTTGGAGGAAAAACAAGAGCCATGGACTCCAACAGATTCTCAGACTGACCCAAGCAAAGAAGCAACATTGGTGCAGAAAATGGAAAGATGTATAAATAGGATTGAGGGATCTGAATTCTATCATACTTTCAGGGATCAAATTCAAACATCCGTTGTTGATTACTTCAATAGAGTTTTGGGCTCAGAGATAAAGATGCAAATGGTCATTTATGGTATTGGCAGCATCAAATTGTATGAGCCCCCTCGACTGCAGCTTAGTCTTGCAATATTGATGAGAAGAGATTTGAGTTGGATTGGAAACATAGAGGTATTTGATCCTATTCTTTCTGCAACTGAGTCTCGGGTTTTGGAAGCTCTTGGTTGTTCTGTCATGTCCATAAATGAGCATGGGAGGCGAGAGGCTCTAAAGCCAACAATGTTCTTCATGCCTCACTGTGAAGCAGAGCTATATAACAACCTGTTGCAAGCAAATTGGAAACTGAATCTCTTAAAAAACATGGTATTATTTGGGAACAGCTTTGAAACATATGAGCAGCACGTGTCACTGTGTAAGAACTCACCTATTCTTAACTCTATGGGGCATATTTTGGCTGCTCAAGGATTCACAAATGAATTTAGAATCCAAACAGTTTCAGATGATTATTATAATGCATTCCATGATTCAAGTTGGCATTTTTTCAGCCCTCTCCTTGAGACAGAGCTGCCTATTATCAATTCTTGA
Predicted protein sequences of Glyma06g08762
>Glyma06g08762.1   sequence type=predicted peptide   gene model=Glyma06g08762   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASEKTLTNKCTTNEGWTVVLPRRSRQRRKATKSGVLEEKQEPWTPTDSQTDPSKEATLVQKMERCINRIEGSEFYHTFRDQIQTSVVDYFNRVLGSEIKMQMVIYGIGSIKLYEPPRLQLSLAILMRRDLSWIGNIEVFDPILSATESRVLEALGCSVMSINEHGRREALKPTMFFMPHCEAELYNNLLQANWKLNLLKNMVLFGNSFETYEQHVSLCKNSPILNSMGHILAAQGFTNEFRIQTVSDDYYNAFHDSSWHFFSPLLETELPIINS*

>Glyma06g08762.2   sequence type=predicted peptide   gene model=Glyma06g08762   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASEKTLTNKCTTNEGWTVVLPRRSRQRRKATKSGVLEEKQEPWTPTDSQTDPSKEATLVQKMERCINRIEGSEFYHTFRDQIQTSVVDYFNRVLGSEIKMQMVIYGIGSIKLYEPPRLQLSLAILMRRDLSWIGNIEVFDPILSATESRVLEALGCSVMSINEHGRREALKPTMFFMPHCEAELYNNLLQANWKLNLLKNMVLFGNSFETYEQHVSLCKNSPILNSMGHILAAQGFTNEFRIQTVSDDYYNAFHDSSWHFFSPLLETELPIINS*






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