Glyma06g08740 - SoyBase

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Report for Sequence Feature Glyma06g08740

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6372767
stop:	6377356
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25770	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:8969308-8971389 REVERSE LENGTH=360	SoyBase	E_val: 3.00E-168	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR17630	Panther	DIENELACTONE HYDROLASE	JGI		ISS
PTHR17630:SF20	Panther	CARBOXYMETHYLENEBUTENOLIDASE	JGI		ISS
PF00326	PFAM	Prolyl oligopeptidase family	JGI		ISS
UniRef100_B9RS30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9RS30_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K9B3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9B3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08740

Paralog	Evidence	Comments
Glyma04g08620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g083100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08740

Limit To All Plant Sequences

>Glyma06g08740.1   sequence type=CDS   gene model=Glyma06g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAAGTTGCACCTACGAGTCCGCTTCCCACGAGGCACGTGCGGATTCTGTTTCACCGCACGTGCCTTGAGCATTCAATAATTACCACCAACTCGCCAAAGTCACTTAATTATAAACGCGGAACGCATTTCACCAGGAGAAGCAGAACCATCGCTCAAGCTCACACTCACAGTAAAATCCAAACCAAAATGGCGGAAAATAAAGCCATTGAAGAAGCTCAGAGCAAGTTCCGTTCAGAGTTCCTTCAAGTTCTGCGTAGTAGGCGACCCGCTCAAGTTCCATTAACAGTCGAATTCGCGAAGCCAGTGGTGAATCCTTTGCATCAGAACTCTCCTCCATCGATCGAAGAGATCAAGATAATGGAGTCGTGTCCGAGAACTGATATAGAGAACCTTGAAGACTTGCTCGAGGAGGAGAATCTCTATTTGAATATAGAGGAAGGAGAGCAAGGACGGTTGCCTTTGTTGATTTTGAAGTTGAAGGAAAGCGATAAGCAGAGAAAAAGGCCTGCAGTTGTTTTTCTTCACAGTACGAACAAATACAAAGAAGTCCTACGTCCATTGCTTAAGGCGTATGCTTCGCGAGGATATATAGCAATTTCTGTTGATTCTCGTTACCATGGAGAACGTGCTACCAGCGCAACCACCTATCGCGATGCACTTATTTCTGCATGGAAAACTGGTGAGACGATGCCATTCATATTTGACACGGTCTGGGACTTGATTAGATTGGCAGATTATCTAACACAGAGAGAGGATATAGACCCTTCTAGGATAGGAATCACTGGAATATCACTTGGAGGAATGCATGCATGGTTTGCTGCAGTTGCTGATACTCGCTATGCTGTGGTTGCTCCTCTGATTGGCATTCAGGGATTTCAATGGGCCATAGGCAACGATAAATGGCAGGCTCGAGTTGATAGTATAAAGCCTCTTTTTGAGGCGGCTCGTGATGATTTGGGTAAAGGTGCTATTGACAAAGAAGTGGTGGAGAAGGTGTGGGACCGAATTGCTCCTGGTTTAGCTTCCCAATTTGACTCACCTTATTCAGTTCCAACTATCGCACCACGTCCTTTGCTTATTGTTAATGGTGCGGAAGATCCTCGGTGTCCCGTTGCAGGCTTGGAAATTCCAAGGGCACAAGCAAGCCAGGCATATGGACAGTTTGACTGTTTAGATAATTTCAAGATTATTACAGAACCTGGAGTTGGACACCAATTAACGAGACTTCAAGTGAAAGAATCATCTTATTGGTTTGACAGGTTCTTGAACCCTTAG

Predicted protein sequences of Glyma06g08740

Limit To All Plant Sequences

>Glyma06g08740.1   sequence type=predicted peptide   gene model=Glyma06g08740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKVAPTSPLPTRHVRILFHRTCLEHSIITTNSPKSLNYKRGTHFTRRSRTIAQAHTHSKIQTKMAENKAIEEAQSKFRSEFLQVLRSRRPAQVPLTVEFAKPVVNPLHQNSPPSIEEIKIMESCPRTDIENLEDLLEEENLYLNIEEGEQGRLPLLILKLKESDKQRKRPAVVFLHSTNKYKEVLRPLLKAYASRGYIAISVDSRYHGERATSATTYRDALISAWKTGETMPFIFDTVWDLIRLADYLTQREDIDPSRIGITGISLGGMHAWFAAVADTRYAVVAPLIGIQGFQWAIGNDKWQARVDSIKPLFEAARDDLGKGAIDKEVVEKVWDRIAPGLASQFDSPYSVPTIAPRPLLIVNGAEDPRCPVAGLEIPRAQASQAYGQFDCLDNFKIITEPGVGHQLTRLQVKESSYWFDRFLNP*

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