Glyma06g08720 - SoyBase

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Report for Sequence Feature Glyma06g08720

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6361642
stop:	6364511
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25760	AT	Annotation by Michelle Graham. TAIR10: peroxin4 \| chr5:8967983-8969173 FORWARD LENGTH=157	SoyBase	E_val: 3.00E-111	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0007031	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome organization	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0417	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF25	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_F8RWT3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding/ubiquitin-protein ligase 4 n=1 Tax=Hevea brasiliensis RepID=F8RWT3_HEVBR	SoyBase	E_val: 4.00E-112	ISS
UniRef100_I1K9A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9A6_SOYBN	SoyBase	E_val: 4.00E-114	ISS

Expression Patterns of Glyma06g08720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08720

Paralog	Evidence	Comments
Glyma04g08606	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g082900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08720

Limit To All Plant Sequences

>Glyma06g08720.2   sequence type=transcript   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATCAGGACGATCTAATCTCTTGTGGAAATATTACTGATTAGTTCCCACCATCGGTGTTGGTAACTAAAGACTTCTTGGTGGGTCCACTGTTTTAGGGTTTGTTTGCACACTTTTCATTTCCGATCCATAATTGTCCCAATTCTTTCCACTCGCGAAATCCAGAGATATCGATCAACAGATTCGTGCGACACGTTAAATTGTTTTCAAGGTTGCGCATATCCAGGATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGGACGAACAAGCAGTTTCTAGGCATAGGGACTCAAATATAAAGATTGTGCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGAATGATTTTAGATAACTTGCTTCCTATGTTCGTTGTTCCAATCTTAATTGTTTGAAATGTATGCATTTTAAGACATGATATTGATTGTTTGATTATATGTATTAAAGTAGTGACTTGTACAATGTACAGAGTGTAGGTGTGACCTCGCATATCTGGATTCATGCGAGAATTGAGGTCAACATATTCAAATAATCCTTATTGCTTGAGTTTTATGAAAGCCTATGTTGCATGGATTCGGGTATGGGTATGGCATGAAATACGGGATTTTCCA

>Glyma06g08720.3   sequence type=transcript   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTCATCTCTTAACACTGCAGTTAAATTGTTTTCAAGGTTGCGCATATCCAGGATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGAATGATTTTAGATAACTTGCTTCCTATGTTCGTTGTTCCAATCTTAATTGTTTGAAATGTATGCATTTTAAGACATGATATTGATTGTTTGATTATATGTATTAAAGTAGTGACTTGTACAATGTACAGAGTGTAGGTGTGACCTCGCATATCTGGATTCATGCGAGAATTGAGGTCAACATATTCAAATAATCCTTATTGCTTGAGTTTTATGAAAGCCTATGTTGCATGGATTCGGGTATGGGTATGGCATGAAATACGGGATTTTCCA

>Glyma06g08720.5   sequence type=transcript   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGATCAGGACGATCTAATCTCTTGTGGAAATATTACTGATTAGTTCCCACCATCGGTGTTGGTAACTAAAGACTTCTTGGTGGGTCCACTGTTTTAGGGTTTGTTTGCACACTTTTCATTTCCGATCCATAATTGTCCCAATTCTTTCCACTCGCGAAATCCAGAGATATCGATCAACAGATTCGTGCGACACGGTTGCGCATATCCAGGATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGAATGATTTTAGATAACTTGCTTCCTATGTTCGTTGTTCCAATCTTAATTGTTTGAAATGTATGCATTTTAAGACATGATATTGATTGTTTGATTATATGTATTAAAGTAGTGACTTGTACAATGTACAGAGTGTAGGTGTGACCTCGCATATCTGGATTCATGCGAGAATTGAGGTCAACATATTCAAATAATCCTTATTGCTTGAGTTTTATGAAAGCCTATGTTGCATGGATTCGGGTATGGGTATGGCATGAAATACGGGATTTTCCA

Coding sequences of Glyma06g08720

Limit To All Plant Sequences

>Glyma06g08720.1   sequence type=CDS   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGA

>Glyma06g08720.2   sequence type=CDS   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGGACGAACAAGCAGTTTCTAGGCATAGGGACTCAAATATAA

>Glyma06g08720.3   sequence type=CDS   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGA

>Glyma06g08720.5   sequence type=CDS   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGCATCGCGGGCAAGGTTGTTCAAAGAGTACAAAGAGGTGCAGCGGGAAAAGGCCGTTGATCCTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTTTGAGGGTGGTGTGTTCCAGCTTGCCTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCTAATGTGCATTTTAAGACTGGAGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCGGCTTGGACGCTTCAATCTGTCTGTAGGGCTATAATTGCCTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGAAATCTTCTGCGTTCAGGCGATGTTAGAGGGTATCAATCCATGGCAAGAATGTACACGAGACTTGCAGCAATGCCAAAGAAAGGCTGA

Predicted protein sequences of Glyma06g08720

Limit To All Plant Sequences

>Glyma06g08720.1   sequence type=predicted peptide   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG*

>Glyma06g08720.2   sequence type=predicted peptide   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGTNKQFLGIGTQI*

>Glyma06g08720.3   sequence type=predicted peptide   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG*

>Glyma06g08720.5   sequence type=predicted peptide   gene model=Glyma06g08720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQASRARLFKEYKEVQREKAVDPDIQLVCDDSNIFKWTALIKGPSETPFEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG*

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