Glyma06g08710 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08710

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6353740
stop:	6360615
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32760	AT	Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein \| chr4:15799376-15803832 FORWARD LENGTH=675	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005795	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG1087	KOG	Cytosolic sorting protein GGA2/TOM1	JGI		ISS
PTHR13856	Panther	VHS DOMAIN CONTAINING PROTEIN FAMILY	JGI		ISS
PTHR13856:SF27	Panther	TARGET OF MYB1 RELATED (TOM1 - RELATED)	JGI		ISS
PF00790	PFAM	VHS domain	JGI		ISS
PF03127	PFAM	GAT domain	JGI		ISS
UniRef100_I1K9A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9A3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2V732	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VHS and GAT domain protein n=2 Tax=Glycine max RepID=Q2V732_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08710

Paralog	Evidence	Comments
Glyma04g08600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g082800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08710

Limit To All Plant Sequences

>Glyma06g08710.2   sequence type=transcript   gene model=Glyma06g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATCTTTGTTATTGTTGTTAGAGACATATAACGAGCGAGGCCGTTACTTACTTATATATCTCTGTGCTATTGCCGGAATCGTTCTTTCAACTCACCGGAAAAGCATCGATCATATCGTCGCCGGCGAGAGGCCATGGTGAATCCCTTGGTGGAACGTGCCACGAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGAATGGGGTATATTCACTCTCAGATCAATTCAGCTCTTGATAGGCTTAAAGAAGATTGGACACAGCAGAGCACAATGAAGGTGGTGCAGTACCTGTAAAGACTCTAATGCTGGAGTTAAAGAGTGATTCTGGCAGAGTAACAATATATATTGAATCTAAGATCTTACAGCTAAAGGGGAGGAGGCATGTATTTACAGGTGAAGGTGGTGGATGCGTGATAGTTACCAAACCCAGTGGGTTGGTGGTGATAGACAGCCATATTTCGGCGATAAAGATGGGGGACTAATGTTGTCCTGGTTAAGATCAATGTTCAGGGGCCATCTAGAGGTTCTTAAATGACAAGGCGTAACTAATGTGGAAGAAGAAAGGGTATATGGGCCTTGTTGAGTGGGCAATACCTCATAAATGCAATCTGTACCTTCCTGTGCACCATGTGCTGGAATGAATCCTCTAGATGATCTGTAGTGAGATGTTTGCTTGGGCCAACTAGAGGCTGGGTTTCCAGGTTCATTCTGTCTTAACTGAGGCATTGTGGGGGACATATGTGTGGGGCCCACCGATTTTTGCTTATATGGGATGGTCCAGAACAGATATAAATGTTTAACTGGAATTTTATGTATATAATTATAATTTTGCTTCCTGGTTTGTCTTTGAGAGTTTGCTAACTCAGTTTGGTTATGATTTATCAGGCATGCAAAGGATGTTGTTAAAGGTTTAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTATCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAAAACTGTGATTGGGCTTGCATTTTTCACCTGTTTGCTAAATCTTGTCGTCTATTTTCTTGATTCTTTTCATTTTTGTTTTACATATATTAATTATAATAATGTATGTACATTATTTATTTTGTTATCCATAAAGTGTTGCTTGTTTGGCAATTGGCAATAAATTATGTACATTTTTTCTAGAGAAAATACTGAACATGGGGGAAAAAATAGGGAGAACATCCTATCGGTTGAACTGGAGTTTGTGGCATCTATCTTCCTCGCTCTCTGTAATGGTTAAAAGTTTGGTGTGCCCTCCAAATTGGGGTCAAATTACATGGAATATATTTCACGCAATTTTTCTAT

Coding sequences of Glyma06g08710

Limit To All Plant Sequences

>Glyma06g08710.1   sequence type=CDS   gene model=Glyma06g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATCCCTTGGTGGAACGTGCCACGAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGGCATGCAAAGGATGTTGTTAAAGGTTTAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTATCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAA

>Glyma06g08710.2   sequence type=CDS   gene model=Glyma06g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAA

Predicted protein sequences of Glyma06g08710

Limit To All Plant Sequences

>Glyma06g08710.1   sequence type=predicted peptide   gene model=Glyma06g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPLVERATSSMLVGPDWALNMEICDILNRDPGHAKDVVKGLKKRIGSKVPRVQILALTLLETIIKNCGDIIHMHVAERDVLHEMVKIVKKKPDYHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSKQSAPVFTPLQTQPLSSYPQNIRDTVAQQDAAEPSAESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVNLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTSAQNPAEKPKPAPTGALVDVDDPLVDIGDTSKQTDVRSSSSAGAGSQTLNQLMLPAPPTSNGSVPPAMVDPQVDLLSGEDYNSPKAETSLALVPLGEQQPASPISQQNALVLFDMFSNGSNAPISVNTQLINVAGQTSPLAPQFQQQTFISQGLFYPNVSVPNVGSPRYEQSPFAQSTGPSWNGQVAQQQQPPSPVYGTASGGSFPPPPWEAQPTDNNSPVAGSQYPQPLQVSQMIMTSIQSGTHPQGPQAMGHDQAVGMYMQPHAGHMSTINNHVQSNQLGLYRQHIQGAAGPYMGMVSHQMHNSPVASMYPQQMHGNQFGGYGYGQQPGVQYLEQQMYGLSVRDDGAPKNSYQVSSPSYVPPGKPSKPEDKLFGDLVNMAKVKPKPTPDQTGSM*

>Glyma06g08710.2   sequence type=predicted peptide   gene model=Glyma06g08710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHVAERDVLHEMVKIVKKKPDYHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSKQSAPVFTPLQTQPLSSYPQNIRDTVAQQDAAEPSAESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVNLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTSAQNPAEKPKPAPTGALVDVDDPLVDIGDTSKQTDVRSSSSAGAGSQTLNQLMLPAPPTSNGSVPPAMVDPQVDLLSGEDYNSPKAETSLALVPLGEQQPASPISQQNALVLFDMFSNGSNAPISVNTQLINVAGQTSPLAPQFQQQTFISQGLFYPNVSVPNVGSPRYEQSPFAQSTGPSWNGQVAQQQQPPSPVYGTASGGSFPPPPWEAQPTDNNSPVAGSQYPQPLQVSQMIMTSIQSGTHPQGPQAMGHDQAVGMYMQPHAGHMSTINNHVQSNQLGLYRQHIQGAAGPYMGMVSHQMHNSPVASMYPQQMHGNQFGGYGYGQQPGVQYLEQQMYGLSVRDDGAPKNSYQVSSPSYVPPGKPSKPEDKLFGDLVNMAKVKPKPTPDQTGSM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain