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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32760 | AT | Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=675 | SoyBase | E_val: 0 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005795 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG1087 | KOG | Cytosolic sorting protein GGA2/TOM1 | JGI | ISS | |
| PTHR13856 | Panther | VHS DOMAIN CONTAINING PROTEIN FAMILY | JGI | ISS | |
| PTHR13856:SF27 | Panther | TARGET OF MYB1 RELATED (TOM1 - RELATED) | JGI | ISS | |
| PF00790 | PFAM | VHS domain | JGI | ISS | |
| PF03127 | PFAM | GAT domain | JGI | ISS | |
| UniRef100_I1K9A3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9A3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2V732 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: VHS and GAT domain protein n=2 Tax=Glycine max RepID=Q2V732_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g08710 not represented in the dataset |
Glyma06g08710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g08600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g082800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g08710.2 sequence type=transcript gene model=Glyma06g08710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATCTTTGTTATTGTTGTTAGAGACATATAACGAGCGAGGCCGTTACTTACTTATATATCTCTGTGCTATTGCCGGAATCGTTCTTTCAACTCACCGGAAAAGCATCGATCATATCGTCGCCGGCGAGAGGCCATGGTGAATCCCTTGGTGGAACGTGCCACGAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGAATGGGGTATATTCACTCTCAGATCAATTCAGCTCTTGATAGGCTTAAAGAAGATTGGACACAGCAGAGCACAATGAAGGTGGTGCAGTACCTGTAAAGACTCTAATGCTGGAGTTAAAGAGTGATTCTGGCAGAGTAACAATATATATTGAATCTAAGATCTTACAGCTAAAGGGGAGGAGGCATGTATTTACAGGTGAAGGTGGTGGATGCGTGATAGTTACCAAACCCAGTGGGTTGGTGGTGATAGACAGCCATATTTCGGCGATAAAGATGGGGGACTAATGTTGTCCTGGTTAAGATCAATGTTCAGGGGCCATCTAGAGGTTCTTAAATGACAAGGCGTAACTAATGTGGAAGAAGAAAGGGTATATGGGCCTTGTTGAGTGGGCAATACCTCATAAATGCAATCTGTACCTTCCTGTGCACCATGTGCTGGAATGAATCCTCTAGATGATCTGTAGTGAGATGTTTGCTTGGGCCAACTAGAGGCTGGGTTTCCAGGTTCATTCTGTCTTAACTGAGGCATTGTGGGGGACATATGTGTGGGGCCCACCGATTTTTGCTTATATGGGATGGTCCAGAACAGATATAAATGTTTAACTGGAATTTTATGTATATAATTATAATTTTGCTTCCTGGTTTGTCTTTGAGAGTTTGCTAACTCAGTTTGGTTATGATTTATCAGGCATGCAAAGGATGTTGTTAAAGGTTTAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTATCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAAAACTGTGATTGGGCTTGCATTTTTCACCTGTTTGCTAAATCTTGTCGTCTATTTTCTTGATTCTTTTCATTTTTGTTTTACATATATTAATTATAATAATGTATGTACATTATTTATTTTGTTATCCATAAAGTGTTGCTTGTTTGGCAATTGGCAATAAATTATGTACATTTTTTCTAGAGAAAATACTGAACATGGGGGAAAAAATAGGGAGAACATCCTATCGGTTGAACTGGAGTTTGTGGCATCTATCTTCCTCGCTCTCTGTAATGGTTAAAAGTTTGGTGTGCCCTCCAAATTGGGGTCAAATTACATGGAATATATTTCACGCAATTTTTCTAT
>Glyma06g08710.1 sequence type=CDS gene model=Glyma06g08710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAATCCCTTGGTGGAACGTGCCACGAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGGCATGCAAAGGATGTTGTTAAAGGTTTAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTATCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAA >Glyma06g08710.2 sequence type=CDS gene model=Glyma06g08710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTACCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAACTTTTGCATGCTGGGGCAGCATTCCCTCAGAGGTCTAAGCAATCTGCACCTGTATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCAGCAAGACGCAGCTGAGCCCTCAGCGGAGTCTGAGTTTCCAGCCCTTAGTTTGTCTGAAATTCAGAATGCACGCGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTAAACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAACATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCCTGCTGAGAAACCGAAACCTGCACCTACTGGAGCACTTGTAGATGTTGATGATCCTTTGGTTGATATTGGAGATACTAGTAAACAAACAGATGTGAGATCGTCTTCTAGTGCTGGAGCTGGGTCTCAAACATTGAATCAGTTAATGCTTCCTGCACCCCCAACATCAAATGGATCAGTCCCCCCTGCAATGGTTGATCCCCAAGTGGACCTACTCAGTGGTGAAGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTAGGAGAACAGCAGCCAGCCAGCCCTATATCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCTAATTAATGTTGCTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGACTGTTTTACCCTAATGTAAGTGTGCCAAATGTGGGGTCACCTCGATATGAGCAATCACCTTTTGCCCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCCTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCTCCCTGGGAAGCGCAACCTACAGATAATAATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTGTCTCAAATGATTATGACGAGTATACAGAGTGGTACACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAGGCTGTTGGAATGTATATGCAGCCACATGCTGGCCATATGTCAACGATCAATAACCATGTCCAAAGCAATCAATTAGGCTTGTACCGACAGCATATTCAGGGTGCTGCTGGTCCCTATATGGGCATGGTTTCACATCAAATGCATAATAGTCCCGTGGCTTCCATGTATCCTCAACAGATGCATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAGGAGTTCAATATCTTGAGCAGCAAATGTATGGTTTATCTGTGAGAGATGACGGTGCTCCGAAAAATTCTTACCAGGTTTCTTCTCCATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATAAGTTATTTGGGGACCTTGTTAATATGGCAAAAGTGAAACCAAAACCTACTCCTGACCAAACTGGTAGCATGTAA
>Glyma06g08710.1 sequence type=predicted peptide gene model=Glyma06g08710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNPLVERATSSMLVGPDWALNMEICDILNRDPGHAKDVVKGLKKRIGSKVPRVQILALTLLETIIKNCGDIIHMHVAERDVLHEMVKIVKKKPDYHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSKQSAPVFTPLQTQPLSSYPQNIRDTVAQQDAAEPSAESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVNLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTSAQNPAEKPKPAPTGALVDVDDPLVDIGDTSKQTDVRSSSSAGAGSQTLNQLMLPAPPTSNGSVPPAMVDPQVDLLSGEDYNSPKAETSLALVPLGEQQPASPISQQNALVLFDMFSNGSNAPISVNTQLINVAGQTSPLAPQFQQQTFISQGLFYPNVSVPNVGSPRYEQSPFAQSTGPSWNGQVAQQQQPPSPVYGTASGGSFPPPPWEAQPTDNNSPVAGSQYPQPLQVSQMIMTSIQSGTHPQGPQAMGHDQAVGMYMQPHAGHMSTINNHVQSNQLGLYRQHIQGAAGPYMGMVSHQMHNSPVASMYPQQMHGNQFGGYGYGQQPGVQYLEQQMYGLSVRDDGAPKNSYQVSSPSYVPPGKPSKPEDKLFGDLVNMAKVKPKPTPDQTGSM* >Glyma06g08710.2 sequence type=predicted peptide gene model=Glyma06g08710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHVAERDVLHEMVKIVKKKPDYHVREKILILIDTWQEAFGGPRARYPQYYAAYQELLHAGAAFPQRSKQSAPVFTPLQTQPLSSYPQNIRDTVAQQDAAEPSAESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVNLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTSAQNPAEKPKPAPTGALVDVDDPLVDIGDTSKQTDVRSSSSAGAGSQTLNQLMLPAPPTSNGSVPPAMVDPQVDLLSGEDYNSPKAETSLALVPLGEQQPASPISQQNALVLFDMFSNGSNAPISVNTQLINVAGQTSPLAPQFQQQTFISQGLFYPNVSVPNVGSPRYEQSPFAQSTGPSWNGQVAQQQQPPSPVYGTASGGSFPPPPWEAQPTDNNSPVAGSQYPQPLQVSQMIMTSIQSGTHPQGPQAMGHDQAVGMYMQPHAGHMSTINNHVQSNQLGLYRQHIQGAAGPYMGMVSHQMHNSPVASMYPQQMHGNQFGGYGYGQQPGVQYLEQQMYGLSVRDDGAPKNSYQVSSPSYVPPGKPSKPEDKLFGDLVNMAKVKPKPTPDQTGSM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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