Glyma06g08680 - SoyBase

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Report for Sequence Feature Glyma06g08680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6337980
stop:	6342187
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25757	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase I-associated factor PAF67 \| chr5:8965515-8967460 REVERSE LENGTH=514	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3677	KOG	RNA polymerase I-associated factor - PAF67	JGI		ISS
PTHR13242	Panther	UNCHARACTERIZED	JGI		ISS
PF10255	PFAM	RNA polymerase I-associated factor PAF67	JGI		ISS
UniRef100_G7ZWE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit L n=1 Tax=Medicago truncatula RepID=G7ZWE0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9A0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08680

Paralog	Evidence	Comments
Glyma04g08570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g082500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08680

Limit To All Plant Sequences

>Glyma06g08680.1   sequence type=CDS   gene model=Glyma06g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACCAAGACTTCGAAGAGCGCCAACAGCAGCAACAACCGCAGGAGCTAGGGTACGACCCGAACTTCGTCCCCGACTCGGTAAAATCCTTCGTGGTCCACCTCTACCGCCACATCCGCGAGAAGAACGTGTACGAGATCCACCAGATGTACGAGAGCTCCTTCCAGACCCTCTCGGAGCGTCTCTTCAAAGACACCCCCTGGCCCTCCGTGGACGCCGTCGCTCACTACGTCGACAACGACCACGTCTTCTGCCTCCTCTACCGCGAGATGTGGTTCCGCCACCTCTACGCCCGCCTCACTCCCACGCTCCGGCAGCGCATCGACTCGTGGGACAACTACTGCAGCCTCTTCCAGGTCGTCCTCCACGGCGTCGTCAACATGCAGCTCCCCAACCAGTGGCTATGGGACATGGTCGATGAGTTCGTCTACCAGTTCCAGAGCTTCTGCCAGTACAGGGCCAAGATGAAGAACAAGACCGAACAGGAAATTGCACTCCTGCGACAGTTCGACCAGGCGTGGAATGTTTTCGGTGTTCTCAACTTCCTCCAGGCGCTGGTGGAGAAGAGTGCTATTATTCAGATTCTGGAGCAGGAGAAGGAGGGGCTTGAGCAGTTTACCGCGACTGATGGGTATGATTACAACGGGGGGAGTAATGTGCTAAAGGTGTTAGGGTATTTTAGTATGGTGGGGTTGCTTAGGGTTCATTGTTTGTTGGGGGATTATCATACTGGGCTCAAGTGCTTGCTTCCTATTGATATTACTCAGCAAGGGGTTTATACTAGTGTTATTGGGAGTCACATCACCACTATTTATCACTATGGTTTCGCCAATCTCATGCTCCGCAGATATGTGGAAGCAATTCGTGAATTTAACAAAATTCTCTTGTACATCTTTAAGACAAAGCAGTATCATCAGAAATCACCCCAATATGAGCAGATACTGAAGAAAAATGAACAAATGTATGCCTTGCTGGCAATTAGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTGATGAAACTGTGAACTCTCAGTTACGTGAGAAGTATGGTGAAAAGATGGTTAGAATGCAGAGATATGATGATGAGGCATTTGCTATCTATGATGAGCTCTTCTCGTATGCATGCCCCAAGTTCATTACCCCTTCAGCACCTAGTTTTGAGGAGCCTCTTGTAAATTACAATCAGGATGCCTATAGACTTCAGTTGAAACTGTTCCTTTATGAAGCAAAGCAACAACAGTTGCTATCAGGTGTCCGGACCTTCTTGAAAGTGTATTCAACAATCTCCCTCACAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGACTATCTTGATGACATACAAGCACAAGACACATGCTGTTGATAGTGATGGGAAAATTACATCCAATGCCGATTTAGATTTCTATATTAATGATGACACAATTCATGTTATGGAGTCTAAGCCTGCCAAACGTTATGGGGATTACTTTTTGCGTCAGATTGTCAAGCTTGAAGGGGTGATCAATGAGATGGACGGTATAAAGCTAGAGTGA

Predicted protein sequences of Glyma06g08680

Limit To All Plant Sequences

>Glyma06g08680.1   sequence type=predicted peptide   gene model=Glyma06g08680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANQDFEERQQQQQPQELGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVFGVLNFLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKQYHQKSPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMVRMQRYDDEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLTKLASYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADLDFYINDDTIHVMESKPAKRYGDYFLRQIVKLEGVINEMDGIKLE*

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