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Report for Sequence Feature Glyma06g08670

Feature Type:gene_model
Chromosome:Gm06
Start:6331332
stop:6336650
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11520AT Annotation by Michelle Graham. TAIR10: aspartate aminotransferase 3 | chr5:3685257-3687721 REVERSE LENGTH=449 SoyBaseE_val: 0ISS
GO:0006520GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006807GO-bp Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004069GO-mf Annotation by Michelle Graham. GO Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity SoyBaseN/AISS
GO:0008483GO-mf Annotation by Michelle Graham. GO Molecular Function: transaminase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG1411 KOG Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 JGI ISS
PTHR11879Panther ASPARTATE AMINOTRANSFERASE JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_O48548UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartate aminotransferase n=3 Tax=Glycine max RepID=O48548_SOYBN SoyBaseE_val: 0ISS
UniRef100_O48548UniRef Annotation by Michelle Graham. Best UniRef hit: Aspartate aminotransferase n=3 Tax=Glycine max RepID=O48548_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08670
ParalogEvidenceComments
Glyma04g08560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g082400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g08670
>Glyma06g08670.2   sequence type=transcript   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAATTTCAATGACTAGTTATAATATAATAATAGGTTATGTTAGAAGATGGTATGTATCACGCTTTTATTGCATCGAGAAAGTAGAAGCGACGAACAGTAGCGAAGAAAGCGATAAGGAGACCCACCGACTAAACGATGATACAAGCGGTGACATTTCAATCGCCATCCATTACATATTAATACTCCATTTGATAATAGTAGCGAAGAAAAAACAAACTCATTCTTCTTACATAATAGGGGAAGGAGAAGAAAAAAAATGAAATAAGAAAAACTCAACTTTGTAATTCGTGGAGGGAATACTTTTCCATTACGCACGCACTTTAATTACAGACGAGAAAATTATAATTAATAGTAATACAGACAGCAGCATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAATGAGCCAAGCTTCTGCTTTCCTAAGATGAACTACACAAAGAAGGATTTGTTGTTGACTATCTTATTATTCTTTCCCCACTTCTTTTTTTTCTGATGAATGCTAGTCTTGAATGGTAGTGTCAAGTGGTAATGAATTTGATGGTTGTAACTACTTTGGTATTTATAGAGGCCATTCTTCCAATATATGTTTGATTAGAAGGGAGATTATACTGAGCATTGTCTTTATCCAAGATGATGATTTTCCTGGTTGTGATTGCTTCGTCATATATATTGAATACTGCCTAGGAGGTGTTCTTAGTACACATTCTTTTGCTAGGTGACTTTTTTCTGTTAAAATTTCCCACTTGTCTTTGCTTCTCTTTCAGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACAGTTTTCAACATGCTCCCTAGTCCCTATAGGAGAACTTCCATTATTTTTGTTTAATAATTGTCAACATCAACAATGAAACCTTTTATTTGATGTGAGATTTTTAAAGGAAACTTTTCTGCCTACCGGGCTCCATCCAGAGATTTAGCATTATAACATTTTTATTCCGTTTCCCAATGTGGCATGATCAAATGTTTCTTAGGGGGATTTTTTTTTCCGAGGGTCCTTGTTGGAAAGAAACAAACATCCGATGGATTAGTTTAAACTCAAATGTGGCGAGATAGATTTGTGGTGGGGTGTGTGAAACGGAATGTCTAAATCATACTATTAGAAAGACTCGGGATGTCATATGGAACCAAGTATTATGAATAAATATAATGTAAATATGAGAATGGTGCACGAGTGAATATCTCCGATAAGATTAAGAATGAGTTTATCAGAGAAAAAGGATAAAGTGACATTGAGAAAAACCGGTGGTTCAGAGATGAGTA
Coding sequences of Glyma06g08670
>Glyma06g08670.1   sequence type=CDS   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAA

>Glyma06g08670.2   sequence type=CDS   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAA
Predicted protein sequences of Glyma06g08670
>Glyma06g08670.1   sequence type=predicted peptide   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDRNLFNDWTIELKAMADRIISMRQELFDALCSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTKEFHIYMTSDGRISMAGLSSKTVPLLADAIHAAVTRVV*

>Glyma06g08670.2   sequence type=predicted peptide   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDR*






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