Glyma06g08670 - SoyBase

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Report for Sequence Feature Glyma06g08670

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6331332
stop:	6336650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11520	AT	Annotation by Michelle Graham. TAIR10: aspartate aminotransferase 3 \| chr5:3685257-3687721 REVERSE LENGTH=449	SoyBase	E_val: 0	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006807	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004069	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity	SoyBase	N/A	ISS
GO:0008483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transaminase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG1411	KOG	Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2	JGI		ISS
PTHR11879	Panther	ASPARTATE AMINOTRANSFERASE	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_O48548	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartate aminotransferase n=3 Tax=Glycine max RepID=O48548_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O48548	UniRef	Annotation by Michelle Graham. Best UniRef hit: Aspartate aminotransferase n=3 Tax=Glycine max RepID=O48548_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08670 not represented in the dataset	Glyma06g08670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08670

Paralog	Evidence	Comments
Glyma04g08560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g082400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08670

Limit To All Plant Sequences

>Glyma06g08670.2   sequence type=transcript   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTAATTTCAATGACTAGTTATAATATAATAATAGGTTATGTTAGAAGATGGTATGTATCACGCTTTTATTGCATCGAGAAAGTAGAAGCGACGAACAGTAGCGAAGAAAGCGATAAGGAGACCCACCGACTAAACGATGATACAAGCGGTGACATTTCAATCGCCATCCATTACATATTAATACTCCATTTGATAATAGTAGCGAAGAAAAAACAAACTCATTCTTCTTACATAATAGGGGAAGGAGAAGAAAAAAAATGAAATAAGAAAAACTCAACTTTGTAATTCGTGGAGGGAATACTTTTCCATTACGCACGCACTTTAATTACAGACGAGAAAATTATAATTAATAGTAATACAGACAGCAGCATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAATGAGCCAAGCTTCTGCTTTCCTAAGATGAACTACACAAAGAAGGATTTGTTGTTGACTATCTTATTATTCTTTCCCCACTTCTTTTTTTTCTGATGAATGCTAGTCTTGAATGGTAGTGTCAAGTGGTAATGAATTTGATGGTTGTAACTACTTTGGTATTTATAGAGGCCATTCTTCCAATATATGTTTGATTAGAAGGGAGATTATACTGAGCATTGTCTTTATCCAAGATGATGATTTTCCTGGTTGTGATTGCTTCGTCATATATATTGAATACTGCCTAGGAGGTGTTCTTAGTACACATTCTTTTGCTAGGTGACTTTTTTCTGTTAAAATTTCCCACTTGTCTTTGCTTCTCTTTCAGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACAGTTTTCAACATGCTCCCTAGTCCCTATAGGAGAACTTCCATTATTTTTGTTTAATAATTGTCAACATCAACAATGAAACCTTTTATTTGATGTGAGATTTTTAAAGGAAACTTTTCTGCCTACCGGGCTCCATCCAGAGATTTAGCATTATAACATTTTTATTCCGTTTCCCAATGTGGCATGATCAAATGTTTCTTAGGGGGATTTTTTTTTCCGAGGGTCCTTGTTGGAAAGAAACAAACATCCGATGGATTAGTTTAAACTCAAATGTGGCGAGATAGATTTGTGGTGGGGTGTGTGAAACGGAATGTCTAAATCATACTATTAGAAAGACTCGGGATGTCATATGGAACCAAGTATTATGAATAAATATAATGTAAATATGAGAATGGTGCACGAGTGAATATCTCCGATAAGATTAAGAATGAGTTTATCAGAGAAAAAGGATAAAGTGACATTGAGAAAAACCGGTGGTTCAGAGATGAGTA

Coding sequences of Glyma06g08670

Limit To All Plant Sequences

>Glyma06g08670.1   sequence type=CDS   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGAATTTGTTCAATGACTGGACTATTGAGTTGAAGGCAATGGCTGATCGCATCATCAGTATGCGCCAAGAACTTTTCGATGCTTTATGTTCCAGAGGCACACCTGGCGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACTGGATTGAATGCGGAACAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAA

>Glyma06g08670.2   sequence type=CDS   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCCCACCGGTTATTCTCAAAACTACCACCTCTCTTTTGGATTCTTCTTCTTCTTCACCACCCTGTGATCGCAGACTCAACACTCTCGCTAGACACTTCCTTCCGCAAATGGCTTCTCACGACAGCATCTCCGCTTCTCCAACCTCCGCTTCTGATTCCGTCTTCAATCACCTCGTTCGTGCTCCCGAAGATCCTATCCTCGGGGTAACTGTCGCTTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGTGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGACAACAGGGTTACCACTGTTCAATGCTTGTCTGGAACTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGAGGCGAATTGCTGGTAGCACAAAGCTATGCAAAGAATCTGGGTCTTTATGGGGAACGTGTTGGCGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAGCTAGTGATTAGGCCCATGTACTCAAGTCCTCCCATTCATGGTGCATCCATTGTGGCTGCCATTCTCAAGGACCGGTAA

Predicted protein sequences of Glyma06g08670

Limit To All Plant Sequences

>Glyma06g08670.1   sequence type=predicted peptide   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDRNLFNDWTIELKAMADRIISMRQELFDALCSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTKEFHIYMTSDGRISMAGLSSKTVPLLADAIHAAVTRVV*

>Glyma06g08670.2   sequence type=predicted peptide   gene model=Glyma06g08670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPPVILKTTTSLLDSSSSSPPCDRRLNTLARHFLPQMASHDSISASPTSASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRRVEQQLINDVSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQDNRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVKTYRYYAPATRGLDFQGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSSPPIHGASIVAAILKDR*

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