Glyma06g08650 - SoyBase

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Report for Sequence Feature Glyma06g08650

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6318258
stop:	6321877
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32720	AT	Annotation by Michelle Graham. TAIR10: La protein 1 \| chr4:15787313-15789498 FORWARD LENGTH=404	SoyBase	E_val: 9.00E-138	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000478	GO-bp	Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006406	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009561	GO-bp	Annotation by Michelle Graham. GO Biological Process: megagametogenesis	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG4213	KOG	RNA-binding protein La	JGI		ISS
PTHR22792	Panther	LUPUS LA RIBONUCLEOPROTEIN	JGI		ISS
PTHR22792:SF4	Panther	RNA-BINDING PROTEIN-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF05383	PFAM	La domain	JGI		ISS
PF08777	PFAM	RNA binding motif	JGI		ISS
UniRef100_B9RS49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9RS49_RICCO	SoyBase	E_val: 4.00E-162	ISS
UniRef100_I1K995	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K995_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08650 not represented in the dataset	Glyma06g08650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08650

Paralog	Evidence	Comments
Glyma04g08540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g082200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08650

Limit To All Plant Sequences

>Glyma06g08650.2   sequence type=transcript   gene model=Glyma06g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAGTGGACGCTGTCGGTTTGGAGTTGGAGTGCGTAGTGGCGTAGTACATTCAGTTATCTTTATCCCCCCATATTTCGTGTTTATATTATTTCTAATTTCTAATCTAAACTGAGCTTTTAAAATTACAAAAGAAACACCATACTTTAAAGCCCAGAGTGCAACGTACTTTGCAAAAACCCTAAACCCTCTCTCTTTCTCTCTCGGCGACTCTGCACTCATCAATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTTGAGTTTTATTTCGGCGATAGCAACCTTCTCACCGATGGTTTCATGAGGAATAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGAAGAAGTGGCCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCAGCTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCGCCATTTGAACATGATCTGAAGCTTGAAGATGTGGAGAAACTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTAGAATTTTCTTCAGAGGAAGATGTAGAAAAGGTCATGAAGGAAAAATTGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGATAGAGAAAAAGAACTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCAGCAGAATAACACAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAAAATGGTGTTGACCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCACTCTGAAATTACTTCAGGAGAAAATGACCAAATGGTAACAGAAAATGTTGGCGATGATGAAGAAAACTCTGAGACGAAAGAAGCAAAGGAAACTGAAAGTGAAGAAAACAATGGGATGAAAGAAGGAAAGGTAACCGAAGGTGAAGACAAGAAACGACAAGCTGGTGGAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGGTAATCGGGTTTCCTCCTTCCTCCAGCCTGTAGAACCGTACGCCTTCTGTTAAATGTTTGTTCTAGGTTTTGCAGCTGTCTATTATAAGTTATAACTATCACCCTCTCCCCCTGGAGTTTGTTTTACTGTTTCTGGAAGGAGGATACATTTCTTTTTTGGATTTGTTTGATTACCCTGATGGCAGTTAGATTCCTGTAACTGAAATTGTCAAACTTTCTTAATTGATTAAATACTCTTGATTTCCTGCTTAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATTCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAACCTGCTTCGTGGTAATCAAGGCAAGCACCGTGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGCAAACATGCACGCTCTAGAGATAACGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGATGCTGCATAATGGGTTGGTTGCCTGATGTATTATCCCCTAATATATACTCAAGTTTTGATTTTATGGTTCGTTGTAACATGGCACATTATCATTACTTGCAATATTTCTTTATAATTTATAATTTATCGCATGCCATTTATTTCTCTCTATTCAG

Coding sequences of Glyma06g08650

Limit To All Plant Sequences

>Glyma06g08650.1   sequence type=CDS   gene model=Glyma06g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTTGAGTTTTATTTCGGCGATAGCAACCTTCTCACCGATGGTTTCATGAGGAATAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGAAGAAGTGGCCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCAGCTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCGCCATTTGAACATGATCTGAAGCTTGAAGATGTGGAGAAACTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTAGAATTTTCTTCAGAGGAAGATGTAGAAAAGGTCATGAAGGAAAAATTGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGATAGAGAAAAAGAACTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCAGCAGAATAACACAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAAAATGGTGTTGACCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCACTCTGAAATTACTTCAGGAGAAAATGACCAAATGGTAACAGAAAATGTTGGCGATGATGAAGAAAACTCTGAGACGAAAGAAGCAAAGGAAACTGAAAGTGAAGAAAACAATGGGATGAAAGAAGGAAAGGTAACCGAAGGTGAAGACAAGAAACGACAAGCTGGTGGAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGTACATTGATTTCAAGATTGGAGCAGAGTCAGGATACATTCGCTTTGAAGAAACTGAAGCTGCTCAGAAAGCACGTGCTGCTGCAGTTATTTCAGAAAAGGATGGCTTGGTTGTAAAGAATTATATTGCTATTCTAGATCCAGTGACTGGTGAGGCCGAAAAAGAATACTGGAACCTGCTTCGTGGTAATCAAGGCAAGCACCGTGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGCAAACATGCACGCTCTAGAGATAACGGGTCTAGAGATCGCCGAAATAAGGCTCAGAAAGTTGATGCTGCATAA

>Glyma06g08650.2   sequence type=CDS   gene model=Glyma06g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGCAATCGTTAGACGAAGAAACAACTAAGAAAGTCATACGACAGGTTGAGTTTTATTTCGGCGATAGCAACCTTCTCACCGATGGTTTCATGAGGAATAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCGCTGATTTGCTCGTTTAATCGAATGCGAAAGCACCTTAATTTGGGTGATGTAAAGCCCGAAGAAGTGGCCCAAGATACCGTGAATGCTGTTGCTCAAACTTTGAGAAATTCAGCTACACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGAAAACTGAACTTCCAAAGCTAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCGCCATTTGAACATGATCTGAAGCTTGAAGATGTGGAGAAACTCTTTGGTCAATATGCCAAGGTTAATAGTGTCCGGCTTCCCCATCATGTTGGAGACAAAAAGTTCTTCTGTGGCACTGCTCTTGTAGAATTTTCTTCAGAGGAAGATGTAGAAAAGGTCATGAAGGAAAAATTGGTATATGCTGGGGCTGAGTTAGAATTAAAACCAAAGAAGGACTTTGATGCAGATAGAGAAAAAGAACTAGAAGATTATAAAAAATCTCGTCCACCTGTGGGTTCAAATCAGCAGAATAACACAAATGTAGAAGAAGACTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCAGATGAAATTCCTTCAGAACAAAATGGTGTTGACCAACAAGCCAAGGACAATAGTGTTGTCTCCAAAACAGATGAAAACCCCCACTCTGAAATTACTTCAGGAGAAAATGACCAAATGGTAACAGAAAATGTTGGCGATGATGAAGAAAACTCTGAGACGAAAGAAGCAAAGGAAACTGAAAGTGAAGAAAACAATGGGATGAAAGAAGGAAAGGTAACCGAAGGTGAAGACAAGAAACGACAAGCTGGTGGAAAATTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGATTTGAAGAGTGTCTTTGAGAAATTTGGTACAGTGAAGGTAATCGGGTTTCCTCCTTCCTCCAGCCTGTAG

Predicted protein sequences of Glyma06g08650

Limit To All Plant Sequences

>Glyma06g08650.1   sequence type=predicted peptide   gene model=Glyma06g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSEDGKKVGRKTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKLFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSEEDVEKVMKEKLVYAGAELELKPKKDFDADREKELEDYKKSRPPVGSNQQNNTNVEEDYPKGLIIAFKLKSISDEIPSEQNGVDQQAKDNSVVSKTDENPHSEITSGENDQMVTENVGDDEENSETKEAKETESEENNGMKEGKVTEGEDKKRQAGGKFSAAAYKDNMDVVSREDLKSVFEKFGTVKYIDFKIGAESGYIRFEETEAAQKARAAAVISEKDGLVVKNYIAILDPVTGEAEKEYWNLLRGNQGKHREFKNKQGRGGWHGRGGKHARSRDNGSRDRRNKAQKVDAA*

>Glyma06g08650.2   sequence type=predicted peptide   gene model=Glyma06g08650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQSLDEETTKKVIRQVEFYFGDSNLLTDGFMRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSEDGKKVGRKTELPKLEEVEQVEIRTLAVSPFEHDLKLEDVEKLFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSEEDVEKVMKEKLVYAGAELELKPKKDFDADREKELEDYKKSRPPVGSNQQNNTNVEEDYPKGLIIAFKLKSISDEIPSEQNGVDQQAKDNSVVSKTDENPHSEITSGENDQMVTENVGDDEENSETKEAKETESEENNGMKEGKVTEGEDKKRQAGGKFSAAAYKDNMDVVSREDLKSVFEKFGTVKVIGFPPSSSL*

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