Glyma06g08620 - SoyBase

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Report for Sequence Feature Glyma06g08620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6290270
stop:	6295904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03120	AT	Annotation by Michelle Graham. TAIR10: signal peptide peptidase \| chr2:937554-940083 FORWARD LENGTH=344	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG2443	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12174	Panther	SIGNAL PEPTIDE PEPTIDASE	JGI		ISS
PTHR12174:SF23	Panther	SIGNAL PEPTIDE PEPTIDASE	JGI		ISS
PF04258	PFAM	Signal peptide peptidase	JGI		ISS
UniRef100_B9SM25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Minor histocompatibility antigen H13, putative n=1 Tax=Ricinus communis RepID=B9SM25_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K992	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K992_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08620

Paralog	Evidence	Comments
Glyma04g08510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g081900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08620

Limit To All Plant Sequences

>Glyma06g08620.4   sequence type=transcript   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACAGCACATAACAATCACGGCCACTTTGCCACGTTCGCAATCAAACCTCTCTCTTTCACTCTTCCGTGGAAGGCCATTCTCGCAACGTTTGAGTTCAGCAGATCCAGAATTTTTCAGAAACCAGGTTAAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCGCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGATGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCGTGCCCAATACCAATACTTTCGAGTCACAGAAAACCGTTACTTTTAAAGCTAACTTATTCAGCAGCACACCTATGTAACTGATTTTGATTTTAAAAAAATGTATTACTTATTTTTCAAATTGGCATTTTGCTTTTACTGCCTGACTGCCCGCCCAATCTGGGTTTCCATAGCAAACTTTTCAAGAATTTTCTTCTCTTTTCTCTCGAGCGCACTCGCACATGCAATTATGCTCTGCCTAAGATAATGAAAATGACACATTTTCAGCGGTGTTCTGTGAATAATTCTGAAATCTAGTCACTAGTTAATATTCTGTAGC

>Glyma06g08620.5   sequence type=transcript   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAATCTTAAAACCCTACTCTTCAATTTCTTTTCTTTTTTTATTTTCATTTTCCCAAATCAATTTCTCTCTCTTTCTCCGATCTGTTTTGCTTCTGGGGCTACCCGCTCCTGCAATTTGCTTTTGCGATTGGAGTGGAAGGCCATTCTCGCAACGTTTGAGTTCAGCAGATCCAGAATTTTTCAGAAACCAGGTTAAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCGCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGATGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCGTGCCCAATACCAATACTTTCGAGTCACAGAAAACCGTTACTTTTAAAGCTAACTTATTCAGCAGCACACCTATGTAACTGATTTTGATTTTAAAAAAATGTATTACTTATTTTTCAAATTGGCATTTTGCTTTTACTGCCTGACTGCCCGCCCAATCTGGGTTTCCATAGCAAACTTTTCAAGAATTTTCTTCTCTTTTCTCTCGAGCGCACTCGCACATGCAATTATGCTCTGCCTAAGATAATGAAAATGACACATTTTCAGCGGTGTTCTGTGAATAATTCTGAAATCTAGTCACTAGTTAATATTCTGTAGC

Coding sequences of Glyma06g08620

Limit To All Plant Sequences

>Glyma06g08620.2   sequence type=CDS   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCGCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGATGACGACAAGTCTAGCAAAAAGGTTGAATAA

>Glyma06g08620.4   sequence type=CDS   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCGCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGATGACGACAAGTCTAGCAAAAAGGTTGAATAA

>Glyma06g08620.5   sequence type=CDS   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCGCTTGTTGTGAAAGTAGATCCGAATTTGAATGTTATTTTGACTGCTTGCCTCACTGTGTTTGTGGGATGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTTTTCTTACTCTTCAAGTTTTTATCTAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCACTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAACGATGACGTTATAGTCTGGCATTTTCCATATTTCCGTTCTTTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACTTTTTTTTGTGCATGGTATGCTTTGCGGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTATTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTGTCCAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCGGCTCTTTTGTATATTGTACCTTCTGTAATTGGGTTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGATGACGACAAGTCTAGCAAAAAGGTTGAATAA

Predicted protein sequences of Glyma06g08620

Limit To All Plant Sequences

>Glyma06g08620.2   sequence type=predicted peptide   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNDDVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQLLEFDESKTANSPQESDDDKSSKKVE*

>Glyma06g08620.4   sequence type=predicted peptide   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNDDVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVIGFLAAHCLWNGDVKQLLEFDESKTANSPQESDDDKSSKKVE*

>Glyma06g08620.5   sequence type=predicted peptide   gene model=Glyma06g08620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNTERIANLALAGLTLAPLVVKVDPNLNVILTACLTVFVGCYRSVKPTPPTETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNDDVIVWHFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALRKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVIGFLAAHCLWNGDVKQLLEFDESKTANSPQESDDDKSSKKVE*

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