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Report for Sequence Feature Glyma06g08586

Feature Type:gene_model
Chromosome:Gm06
Start:6268497
stop:6278714
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08586
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11490AT Annotation by Michelle Graham. TAIR10: adaptin family protein | chr5:3671964-3676144 FORWARD LENGTH=841 SoyBaseE_val: 0ISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0015031GO-bp Annotation by Michelle Graham. GO Biological Process: protein transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
GO:0043424GO-mf Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase binding SoyBaseN/AISS
KOG1061 KOG Vesicle coat complex AP-1/AP-2/AP-4, beta subunit JGI ISS
PTHR11134Panther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT JGI ISS
PTHR11134:SF4Panther ADAPTER-RELATED PROTEIN COMPLEX 4, BETA SUBUNIT JGI ISS
PF01602PFAM Adaptin N terminal region JGI ISS
PF09066PFAM Beta2-adaptin appendage, C-terminal sub-domain JGI ISS
UniRef100_B9RS58UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit beta-1, putative n=1 Tax=Ricinus communis RepID=B9RS58_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233A309UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A309 related cluster n=1 Tax=unknown RepID=UPI000233A309 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g08586
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08586 not represented in the dataset
Glyma06g08586 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08586
ParalogEvidenceComments
Glyma04g08480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08586 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g081600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08586
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g08586
>Glyma06g08586.2   sequence type=transcript   gene model=Glyma06g08586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTATTTGCAGTGTCGCAAAAAACATGGCTTAGAACTTAGAAGTGGAAGAGAGTCCAATACAGGCAATCAGATCTCGCCACTTCAGCCTCTCATACGTCGAAAGTATATGCACCATGTGCATTTTTTTCTTAATTTTTTTTGGTATCGTTTCTTTCCACCAGACACGATCTCACTTTCTCTGAAGAAGCAAAGAGTCGATCTAACCGTGTCGTCGTTCCACTCAACTTTCAGTGGCTATGGCTCCACCGCCTCCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTATTTGGCGAGATGGTAATGTGCTCCGCAACGTCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGGCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAACTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTATTGCTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGGCTCCAGCATGCAAACGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCGGGAAGTCCAGAACAATCGTATGCAGTTTTAAGCCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAAGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGATTGCTACTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATATAATGTATCAGTGGCAGAGAGTGTGGTCAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAAAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTGCAGATTCTGTTGTTCCAGCCCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCGCCTTCCTATAATGGTTCATCTGCTCCTACAACTTCACAACCACTTGCAGATTTGGCATTTCCAAGTACTGGCATATCTGGTCAAGCTCCTGCTTCTAGCTTGGCAATTGATGATCTGCTTGGTTTAGATTTTCCAGTTGAGACTGCAGCCATGCCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGCGCATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCTGAGGAATATTCTCTAAGTCCTCAAGGAGTCACATCGTTGACAACTCCTCATGCACTTCTTCGCCACATGCAAAGTCATTCAATACAATGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTTGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTAAATCTTTATGGTGCCTTCAGAGCTTTGAAATCAGCTGTTATGAAATGTTGCAATCCTAGATTGAATATATAAGGGAATGGAGGATATTGACTCCATACCTCCCCCCTCCCCGAAAGAGAAAGAAAATTCAGATTGATGTATAACAGGAAAATGCAGGGGGGTTCCATTGGCTAAAAGATTTTGTAGTTGTTCTGTATCCAAATCATCGTGATCCATCAAATATTCAGTTGTAGAAAACCTAGTCTGGGTTGCAAGTTTGTAGAGGTTTTATGTTGATGTTCTGACGTTTATTCAAGTGTTCATTGTGTTCTAGGTCATTGCCATTGATTGACTTCTGGTTAATTTCTGTGCCGGGTTGGTGCTGAAATGTGAATCTGGACCCTTTATCAGTTGATTGCTTAATACACAAATGATGCTTGATGCCTGTTGTGTTGTGGCTTGTTGGTTTGCGTTAGGTGATTTTTT
Coding sequences of Glyma06g08586
>Glyma06g08586.1   sequence type=CDS   gene model=Glyma06g08586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCGCCTCCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTATTTGGCGAGATGGTAATGTGCTCCGCAACGTCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGGCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAACTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTATTGCTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGGCTCCAGCATGCAAACGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCGGGAAGTCCAGAACAATCGTATGCAGTTTTAAGCCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAAGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGATTGCTACTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATATAATGTATCAGTGGCAGAGAGTGTGGTCAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAAAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAATTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTGCAGATTCTGTTGTTCCAGCCCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCGCCTTCCTATAATGGTTCATCTGCTCCTACAACTTCACAACCACTTGCAGATTTGGCATTTCCAAGTACTGGCATATCTGGTCAAGCTCCTGCTTCTAGCTTGGCAATTGATGATCTGCTTGGTTTAGATTTTCCAGTTGAGACTGCAGCCATGCCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGCGCATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCTGAGGAATATTCTCTAAGTCCTCAAGGAGTCACATCGTTGACAACTCCTCATGCACTTCTTCGCCACATGCAAAGTCATTCAATACAATGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTTGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTAA

>Glyma06g08586.2   sequence type=CDS   gene model=Glyma06g08586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCGCCTCCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTTGCTGGGAGCCGAGCTCCGGGTGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTATTTGGCGAGATGGTAATGTGCTCCGCAACGTCAGACATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGGCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGGTCTGGGTTGAAGGACAATAATAGTTATGTCAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAACTTCCACCTGTATTGATGCAGATTTTCCAGCAACACTGAAGCATTTATTGCTTAATGACCCTGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGGCTCCAGCATGCAAACGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTACAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCGGGAAGTCCAGAACAATCGTATGCAGTTTTAAGCCACCTGCATCTTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAAGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGATTGCTACTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATATAATGTATCAGTGGCAGAGAGTGTGGTCAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAAAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTGCAGATTCTGTTGTTCCAGCCCAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAA
Predicted protein sequences of Glyma06g08586
>Glyma06g08586.1   sequence type=predicted peptide   gene model=Glyma06g08586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPPPQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISTSTCIDADFPATLKHLLLNDPDTQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVSKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGIATDFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESADSVVPAQRVEANDKDLLLSTSEKDEGRDPGSNGSVYNAPSYNGSSAPTTSQPLADLAFPSTGISGQAPASSLAIDDLLGLDFPVETAAMPSPPPLNLNPKAVLDPGAFQQKWRQLPISLSEEYSLSPQGVTSLTTPHALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEAASMYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP*

>Glyma06g08586.2   sequence type=predicted peptide   gene model=Glyma06g08586   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPPPQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISTSTCIDADFPATLKHLLLNDPDTQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVSKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGIATDFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKMNLEIYLLVQNLQILLFQPREWKQMTRICF*






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