Glyma06g08580 - SoyBase

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Report for Sequence Feature Glyma06g08580

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6261250
stop:	6265595
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11480	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:3669350-3671471 REVERSE LENGTH=318	SoyBase	E_val: 4.00E-147	ISS
GO:0000917	GO-bp	Annotation by Michelle Graham. GO Biological Process: barrier septum assembly	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006399	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process	SoyBase	N/A	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG2486	KOG	Predicted GTPase	JGI		ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_G7J3E8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis GTP-binding protein YsxC n=1 Tax=Medicago truncatula RepID=G7J3E8_MEDTR	SoyBase	E_val: 3.00E-153	ISS
UniRef100_I1K986	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K986_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08580

Paralog	Evidence	Comments
Glyma04g08470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g081500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08580

Limit To All Plant Sequences

>Glyma06g08580.3   sequence type=transcript   gene model=Glyma06g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTCCTTGGTCTATTTTTTTCCCTAAAGTTTATGATCATCCAAACGGGGTTTTGGAGTAACACTGCAGTGCCCAAGATATTTTTGCTGAGAGTCCCTAACTTGTGCACAGAGATAACAAAAAACACAGTGAAATGGTCCTTCTATACCTCCCAAGGTTTCCTCTCTACCTCGTTACCTTATCTCACTCCCTCCCTCGTCGAACCTACTCCAAAACCACCCTCTTACGCCCACCCAAATCCACTCTCACAACCTCACAACCCTTAACCGTTAACCCTTCCCCCACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCAAGAGTCTTGAACGGTTCTAACATTCTGCTGAGTAACTACGCCAACGATGCTCAGGTATTGCAGGCCGAGTTTGTGAAAAGCAGTGTGAAGACTGAAGACTGTCCCTCCGATGGAATTCCCGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGCAAATCCTCGCTCCTTAATTCCCTCGTCCGCCGCAAGAAACTCGCCTTAACTTCGAAGAAACCCGGCAAAACACAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGTTATGGGTATGCATCTGCACCACATGAACTTAGGATGGATTGGGAAAAATTCACCAAGGACTATTTCCTTAACCGCTCAACCTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGACAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCCGTGCCTCCGTGGATCATGACCAGTAGCGTTACTAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAGTTCTGAGAAACATGACATAGTTAGAGCAGGCCACTGCATATTCTTTTTTTTTTTCCGGCTGGAGATGAGCTGAAGAATCAAAATACACGCAAGGATGCAACTGGAAAACAGCACCCGTGTAAAAACTTATAACATTTTTCTCTTTATACGACAGTGAGAAGAATGAGATATCAGATAGTAGTATCATTTTCCCATTGTTGTTCTTTATCAAATCTATAAATTATCCTTTATGCTCTCGATGTTTATCAGATTGTTGCATTTTTCATTGAAGTTGAAGATTGAATAAATGTTTTGTGAAGTTAAGGGTTTTTTTTTTACAGCTAAAATTATGGATTAAAGTAAACATTTATAAA

Coding sequences of Glyma06g08580

Limit To All Plant Sequences

>Glyma06g08580.2   sequence type=CDS   gene model=Glyma06g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCTTCTATACCTCCCAAGGTTTCCTCTCTACCTCGTTACCTTATCTCACTCCCTCCCTCGTCGAACCTACTCCAAAACCACCCTCTTACGCCCACCCAAATCCACTCTCACAACCTCACAACCCTTAACCGTTAACCCTTCCCCCACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCAAGAGTCTTGAACGGTTCTAACATTCTGCTGAGTAACTACGCCAACGATGCTCAGGTATTGCAGGCCGAGTTTGTGAAAAGCAGTGTGAAGACTGAAGACTGTCCCTCCGATGGAATTCCCGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGCAAATCCTCGCTCCTTAATTCCCTCGTCCGCCGCAAGAAACTCGCCTTAACTTCGAAGAAACCCGGCAAAACACAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGTTATGGGTATGCATCTGCACCACATGAACTTAGGATGGATTGGGAAAAATTCACCAAGGACTATTTCCTTAACCGCTCAACCTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGACAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCCGTGCCTCCGTGGATCATGACCAGTAGCGTTACTAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAG

>Glyma06g08580.3   sequence type=CDS   gene model=Glyma06g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCTTCTATACCTCCCAAGGTTTCCTCTCTACCTCGTTACCTTATCTCACTCCCTCCCTCGTCGAACCTACTCCAAAACCACCCTCTTACGCCCACCCAAATCCACTCTCACAACCTCACAACCCTTAACCGTTAACCCTTCCCCCACAGAGCTATCCCTCGAGAAGCTCTTCGTTCCGCCGGAGACCACCGTGTCCCTCGAAAGTTCAAGAGTCTTGAACGGTTCTAACATTCTGCTGAGTAACTACGCCAACGATGCTCAGGTATTGCAGGCCGAGTTTGTGAAAAGCAGTGTGAAGACTGAAGACTGTCCCTCCGATGGAATTCCCGAGTTCGCTCTCGTTGGCCGCTCCAACGTCGGCAAATCCTCGCTCCTTAATTCCCTCGTCCGCCGCAAGAAACTCGCCTTAACTTCGAAGAAACCCGGCAAAACACAATGTATAAACCATTTTCGGATTAATAATAGCTGGTACCTGGTTGATTTGCCTGGTTATGGGTATGCATCTGCACCACATGAACTTAGGATGGATTGGGAAAAATTCACCAAGGACTATTTCCTTAACCGCTCAACCTTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATTGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACATTAATCTTCACCAAATGTGACAAGCGGAAAAAGAAAAAGAATGGAGGCAAAAGACCAGAAGACAATGTTAATGATTTTCAGGATTTGATTCGAGGTTTCTTCCAATCCGTGCCTCCGTGGATCATGACCAGTAGCGTTACTAATCAGGGTCGTGATGAGATACTCCTCCATATGGCCCAGCTACGGAACTACTGGCTCAAGCACTAG

Predicted protein sequences of Glyma06g08580

Limit To All Plant Sequences

>Glyma06g08580.2   sequence type=predicted peptide   gene model=Glyma06g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLYLPRFPLYLVTLSHSLPRRTYSKTTLLRPPKSTLTTSQPLTVNPSPTELSLEKLFVPPETTVSLESSRVLNGSNILLSNYANDAQVLQAEFVKSSVKTEDCPSDGIPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINNSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEDNVNDFQDLIRGFFQSVPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH*

>Glyma06g08580.3   sequence type=predicted peptide   gene model=Glyma06g08580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLYLPRFPLYLVTLSHSLPRRTYSKTTLLRPPKSTLTTSQPLTVNPSPTELSLEKLFVPPETTVSLESSRVLNGSNILLSNYANDAQVLQAEFVKSSVKTEDCPSDGIPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINNSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTLIFTKCDKRKKKKNGGKRPEDNVNDFQDLIRGFFQSVPPWIMTSSVTNQGRDEILLHMAQLRNYWLKH*

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