Glyma06g08560 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08560

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6238858
stop:	6243511
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25620	AT	Annotation by Michelle Graham. TAIR10: Flavin-binding monooxygenase family protein \| chr5:8935520-8938224 REVERSE LENGTH=417	SoyBase	E_val: 0	ISS
GO:0009851	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0004497	GO-mf	Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity	SoyBase	N/A	ISS
GO:0004499	GO-mf	Annotation by Michelle Graham. GO Molecular Function: N,N-dimethylaniline monooxygenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
GO:0050661	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADP binding	SoyBase	N/A	ISS
KOG1399	KOG	Flavin-containing monooxygenase	JGI		ISS
PTHR23023	Panther	DIMETHYLANILINE MONOOXYGENASE	JGI		ISS
PTHR23023:SF5	Panther	MONOOXYGENASE	JGI		ISS
PF00743	PFAM	Flavin-binding monooxygenase-like	JGI		ISS
UniRef100_G7J3E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dimethylaniline monooxygenase n=1 Tax=Medicago truncatula RepID=G7J3E6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JUR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JUR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08560

Paralog	Evidence	Comments
Glyma04g08440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g081300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08560

Limit To All Plant Sequences

>Glyma06g08560.2   sequence type=CDS   gene model=Glyma06g08560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATTTCTTGAGAGAAATAGAAGGAAAGCAAGCACATGACCCGTTGTTCATGAACAATTACAACAAGTCGTCGTCATCGTCATCGTCGTTTTCGTCATCATCTTCTTCCACCGTGTGGGTTCATGGGCCTGTGATAGTAGGAGCCGGGCCTTCAGGGCTGGCAGCAGCAGCATGTCTGAGGGACAAAAGTGTCCCAAGCGTGATACTAGAGCGATCCAATTGCATAGCATCTCCATGGCAGCTCAAAACCTATGATCGCTTACGCCTTCACCTTCCAAAGCAATTCTGCGAGCTTCCCTTCATGGGGTTCCCTTCTCACTTCCCAAATTACCCTTCAAAGCAACAGTTTGTACAGTACTTGGAGAATTACGCGGAGAGTTTTGGGATTAGGCCGAGGTTCAATGAGACGGTGCAGCATGCGGAGTTTGACGGCAAACTCGGCTTGTGGCGGGTGAAGAGCGTGGACAAGGTGGGGAAGACGACGGAGTACATGTGCCGGTGGCTGATCGTGGCCACCGGAGAGAATGCGGAGGCGGTGGTGCCGGATATCGAAGGGGTGGAGGAGTTTGGCGCTCCTATAAAACACACAAGCTTGTATAAGAGTGGGGAAGAGTTCAGAGGGAAGAGGGTTTTGGTGGTGGGGTGTGGGAATTCGGGGATGGAAGTGTGCTTAGATCTTTGCAACCATAATGCTACTCCTTCTCTTGTGGTTAGAGACACAGTACACGTCCTACCACGAGAGATGCTGGGAAAATCAACTTTCGGGTTGTCCATGTGGTTGCTCAAGTGGTTACCCATGCGACTTGTCGATCGATTCTTGCTAATGGTGTCATGGCTTCTGCTTGGTGACACTTCTCATTTGGGATTGGATAGGCCTCGTTTGGGTCCCTTAGAACTCAAAAACCTTTCAGGAAAAACCCCTGTGCTAGATGTGGGTACCCTTGCCAAGATTAAAGGTGGAGACATTAAGGTACGTCCAGCCATTAAGCGACTTAAACGTCACACTGTGGAATTCGTGGATGGAAGGACAGAGAATTATGATGCAATCATATTGGCAACTGGTTACAAAAGCAATGTGCCCTATTGGCTTAAGGAAGAAGATATGTTCTCTAAGAAAGATGGGTACCCTAGGAGGCCATTTCCAAATGGGAGGAAAGGTAGAAATGGGCTCTATGCGGTTGGTTTTACCAAAAAGGGTCTACTAGGTGCGTCCATGGATGCAAAGAGAATAGCCGAAGACATTGAACAGTGTTGGGAAACTGGGGCAAATCATAGAACTACTCTTGCTCCTTCACACTTGCCGCAACCAAATTCATAA

Predicted protein sequences of Glyma06g08560

Limit To All Plant Sequences

>Glyma06g08560.2   sequence type=predicted peptide   gene model=Glyma06g08560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYFLREIEGKQAHDPLFMNNYNKSSSSSSSFSSSSSSTVWVHGPVIVGAGPSGLAAAACLRDKSVPSVILERSNCIASPWQLKTYDRLRLHLPKQFCELPFMGFPSHFPNYPSKQQFVQYLENYAESFGIRPRFNETVQHAEFDGKLGLWRVKSVDKVGKTTEYMCRWLIVATGENAEAVVPDIEGVEEFGAPIKHTSLYKSGEEFRGKRVLVVGCGNSGMEVCLDLCNHNATPSLVVRDTVHVLPREMLGKSTFGLSMWLLKWLPMRLVDRFLLMVSWLLLGDTSHLGLDRPRLGPLELKNLSGKTPVLDVGTLAKIKGGDIKVRPAIKRLKRHTVEFVDGRTENYDAIILATGYKSNVPYWLKEEDMFSKKDGYPRRPFPNGRKGRNGLYAVGFTKKGLLGASMDAKRIAEDIEQCWETGANHRTTLAPSHLPQPNS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain