Glyma06g08540 - SoyBase

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Report for Sequence Feature Glyma06g08540

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6214144
stop:	6218174
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25610	AT	Annotation by Michelle Graham. TAIR10: BURP domain-containing protein \| chr5:8914498-8916684 REVERSE LENGTH=392	SoyBase	E_val: 4.00E-124	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF03181	PFAM	BURP domain	JGI		ISS
UniRef100_B9VSG5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BURP domain protein n=1 Tax=Glycine max RepID=B9VSG5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TI21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI21_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08540

Paralog	Evidence	Comments
Glyma04g08410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g081100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08540

Limit To All Plant Sequences

>Glyma06g08540.1   sequence type=CDS   gene model=Glyma06g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTATCGTCTCCTACCCATTTTTACTTTACTCAATCTTGCACTGGTGGCAATCCATGCTGCTTTACCTCCTGAAGTTTACTGGAAGTCGGTGCTTCCTACTACGCCAATGCCAAAAGCCATCACTGATATCCTTTACCCCGATTGGGTGGAAGAGAAAAGTACCTCAGTGAATGTTGGAGGCAAGGGCGTAAACGTGCATGCAGGAAAAGGAGGAGGTGGCACCAATGTCAACGTTGGTGGAAAAGGATCAGGCGGAGGCGTGAACGTGCATGCAGGTCACAAGGGAAAGCCAGTGCATGTTTCTGTTGGCTCAAAGTCTCCATTCAATTACATCTACGCTTCAACGGAGACTCAATTACACGATGACCCCAACGTCGCACTCTTCTTCTTGGAAAAGGACTTGCATCCCGGAACAAAGTTGAACTTGCACTTCACCACCAGTTCCAATATTCAAGCCACATTCTTGCCACGCCAAGTTGCGGATTCTATACCCTTTTCATCCAGCAAGGTGGAGGTTGTATTCAACAAGTTTTCCGTAAAACCCGGGTCAGAGGAGGCCCAGATCATGAAGAATACTCTCAGTGAGTGTGAAGAGGGTGGCATCAAAGGAGAGGAAAAGTACTGTGCCACTTCGCTTGAATCCATGATTGATTTCAGCACTTCCAAGCTTGGAAAAAATGTTGAGGTTGTGTCCACGGAAGTAGTGGAGGACAAGGAAACGGGATTGCAGAAATACACCGTAGCACCGGGAGTGAACAAGTTATCAGGGGACAAGGCTGTTGTGTGCCACAAGCAGAACTACCCTTATGCTGTTTTTTACTGTCACAAAACTGAGACCACAAGAGCTTACTCTGTGCCTTTGGAGGGTGCTAATGGGGTTAGGGTTAAAGCGGTAGCAGTGTGCCACACTCACACGTCGGAATGGAACCCTAAACATTTGGCCTTTCAAGTGCTCAAAGTTAAGCCAGGAACCGTTCCTGTCTGCCACTTCCTACCTGAGGATCATGTTGTTTGGGTTCCCAAGTAG

Predicted protein sequences of Glyma06g08540

Limit To All Plant Sequences

>Glyma06g08540.1   sequence type=predicted peptide   gene model=Glyma06g08540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYPDWVEEKSTSVNVGGKGVNVHAGKGGGGTNVNVGGKGSGGGVNVHAGHKGKPVHVSVGSKSPFNYIYASTETQLHDDPNVALFFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSSKVEVVFNKFSVKPGSEEAQIMKNTLSECEEGGIKGEEKYCATSLESMIDFSTSKLGKNVEVVSTEVVEDKETGLQKYTVAPGVNKLSGDKAVVCHKQNYPYAVFYCHKTETTRAYSVPLEGANGVRVKAVAVCHTHTSEWNPKHLAFQVLKVKPGTVPVCHFLPEDHVVWVPK*

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