Glyma06g08520 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6191412
stop:	6195198
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25590	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) \| chr5:8906684-8909847 REVERSE LENGTH=775	SoyBase	E_val: 0	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR21450	Panther	UNCHARACTERIZED	JGI		ISS
PF04782	PFAM	Protein of unknown function (DUF632)	JGI		ISS
PF04783	PFAM	Protein of unknown function (DUF630)	JGI		ISS
UniRef100_Q9C824	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP protein, putative; 48652-45869 n=1 Tax=Arabidopsis thaliana RepID=Q9C824_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A305	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A305 related cluster n=1 Tax=unknown RepID=UPI000233A305	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08520

Paralog	Evidence	Comments
Glyma04g08400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g080900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08520

Limit To All Plant Sequences

>Glyma06g08520.1   sequence type=CDS   gene model=Glyma06g08520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGTGCACAGTCCCGAATAGACAACGAGGAATCCGTGTCTCGCTGCAAGGACCGTAAAAATCTCATCAAAGACGCCGTCGTCGCTCGCAACGCCTTCGCCGCCGGCCATTCAGGCTACGCCGTTGCGCTCAAGAACACCGGCGCCGCCCTCAGCGACTACGCCCACGGCGAGACCCACGACCCCCACCCTCCGCCCCTCGACCCTCCCTCCTCCTCCGCCGACCCTCCGCCGCCGCCGCCGCCACCAATCGACGACAGTCTCCCTCCCCCGCCGCCGCCTCTCCCGGAGTTCTCCCCCGCCCCGGCGCCGCTTTCTCGCTCCGTCACCATGCCCGCCGGCGTCATGCACCACTACCGCCACCGCAGCCCCGTCCCCCTCTCCATCGCCGAGGAGGACGAAGAGCAAGATGCAACCCCCAAGCTGGCGAGGAAAACCGCCGGATCGCCGCCTCCGGAGATGAAGACTCCGCCGCCGCCGCCTCCGGAGTCGAAGGGCATGGCTTGGGATTACTTCTTCATGGTGGAGAACATGCCTGGACGTTCTCTCAGTGCTGAAGATGATAATGATGATGATGATGATGATGATAATCATATTCATAACCATAATCATAATGATGATGGTGAGCGTAAAATGGAGAATGTGGTTGAAGATGAGGTTGAGCCTAAGACACCAGATAAAGTGCAGGAACATGAGAATGTGAGTATTCATGAGGAGCATGATGATGGGATAAGTGAAGCGAAGAAATACATTGAGCATTCTAAAACTGCTCCTGCTGAGTTTAGAAGAGCTATAAAGGTGGTTCCTTCTGTTACTCTTATGCAGATTCTCAATGTCCTTGATGATCACTTCTTGAAGGCCTCCGAGGGCGCTCAGGAAGTTACCAAGATGCTCGAGGCTACTAGGTTGCATTATCATTCCAATTTCGCCGATAATCGCGGGCACATTGATCATTCTGCTAGGGTTATGCGTGTCATAACATGGAATAGGTCCTTCAGAGGTGTGTCCAATGGGGATGCCGCTAAAGATGACATTGATTCTGAGGAATATGAAACTCATGCCACTGTGTTGGATAAGTTGTTGGCATGGGAGAAGAAACTTTATGAAGAAGTCAAGCAAGGTGAGCTTATGAAGTTTGAATATCAGAGAAAAGTTGCAATTCTAAACAAGCAGAAGAAGCGTGGTGCCAGTGCTGAATCCTTAGAAAAGACTAAAGCAGCTGTTAGCCATTTGCATACAAGATATATTGTTGACATGCAGTCGATGGATTCAACAGTTTCAGAAGTGAACCATATTCGAGATGCCCAGTTGTATCCGAAACTTGTTGCTCTTGTTATTGAGATGGCAAATATGTGGGAAAATATGTGCTTACATCATGACAGCCAGCTGAAAATAGTTACAGACCTCAAATCTCTTGATATTTCTCAAGCTCCTAAGGAAACAACCAAGCATCATTATGATCGCACTGTGCAACTTGAGAAAGTCATCCTGGAATGGCATTTACAATTTGAGAAGCTTGTGACTCAACAGAAACATTACATCAAAGCTCTTAACAGCTGGCTAAAGTTAAATCTCATTCCTATTGAAAGCAACCTAAAAGAGAAAATCTCATCCCCTCCAAAAGCTCAGAATCCTCCAATCCAAGCCCTTCTCCATGCATGGCATGATTATGTTGACAAGCTTCCTGATGAGCTTGCCAAATCTGCTATTTCCTCCTTTGCTGCTGTGATAAAGACGATCTTACTTCAGCAGGAGGAAGAGATGAAGTTAAAGGAGCGATGTGAGGAAACCAGAAAGGAATACTTGAAGAAAAAACAAGCATTTGAGGAATGGTACCAGAAGCATTTAATGCGGAGAGGGCCTGATGAAGCAGAACATGAAAGAGGAGAGGAAGTAAACACAAATAATCCTGTCTCGGAGAGGCAGTTTGTTGTTGAGAGCTTGCAGAAGAGATTAGAAGAGGAAATTGAATCCCACCAAAAACATTGCATTCAGGTGCGAGAGAAATCACTGCAGAGTCTCAAAACTCGCTTGCCTGAACTCTTCCGTGCATTGTCAGACTATGCTCATGCCTGTGCTGAGGCTTATGAGAAGCTGAAGTTAATCACACAGTCACGAGGTGGTGGGGCATAA

Predicted protein sequences of Glyma06g08520

Limit To All Plant Sequences

>Glyma06g08520.1   sequence type=predicted peptide   gene model=Glyma06g08520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCAQSRIDNEESVSRCKDRKNLIKDAVVARNAFAAGHSGYAVALKNTGAALSDYAHGETHDPHPPPLDPPSSSADPPPPPPPPIDDSLPPPPPPLPEFSPAPAPLSRSVTMPAGVMHHYRHRSPVPLSIAEEDEEQDATPKLARKTAGSPPPEMKTPPPPPPESKGMAWDYFFMVENMPGRSLSAEDDNDDDDDDDNHIHNHNHNDDGERKMENVVEDEVEPKTPDKVQEHENVSIHEEHDDGISEAKKYIEHSKTAPAEFRRAIKVVPSVTLMQILNVLDDHFLKASEGAQEVTKMLEATRLHYHSNFADNRGHIDHSARVMRVITWNRSFRGVSNGDAAKDDIDSEEYETHATVLDKLLAWEKKLYEEVKQGELMKFEYQRKVAILNKQKKRGASAESLEKTKAAVSHLHTRYIVDMQSMDSTVSEVNHIRDAQLYPKLVALVIEMANMWENMCLHHDSQLKIVTDLKSLDISQAPKETTKHHYDRTVQLEKVILEWHLQFEKLVTQQKHYIKALNSWLKLNLIPIESNLKEKISSPPKAQNPPIQALLHAWHDYVDKLPDELAKSAISSFAAVIKTILLQQEEEMKLKERCEETRKEYLKKKQAFEEWYQKHLMRRGPDEAEHERGEEVNTNNPVSERQFVVESLQKRLEEEIESHQKHCIQVREKSLQSLKTRLPELFRALSDYAHACAEAYEKLKLITQSRGGGA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain