Glyma06g08480 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g08480

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6172742
stop:	6176475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32660	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr4:15756420-15759107 FORWARD LENGTH=392	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0045727	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0659	KOG	Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7	JGI		ISS
KOG0671	KOG	LAMMER dual specificity kinases	JGI		ISS
PTHR24058	Panther	DUAL SPECIFICITY PROTEIN KINASE	JGI		ISS
PTHR24058:SF30	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J2X1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase AFC3 n=1 Tax=Medicago truncatula RepID=G7J2X1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K978	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K978_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08480

Paralog	Evidence	Comments
Glyma04g08361	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g080600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08480

Limit To All Plant Sequences

>Glyma06g08480.2   sequence type=transcript   gene model=Glyma06g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATTTTTTTAAGCAGAGGGCATAAAAAAAAACCTGAACCCTAACGCCTTTTGGTTTCGCAATTGTAGTTTCCTCCGTTTTTCTGACACTGCATTCTCTTCCCCTTTCAAAGATTTAACCTTATTTGCTCGCAGATATGCGCGGTTACTGATTCGTCGATGGTATCTGTCGAAAAAATTCACATCGAAAGGGAACGAACACGGAAACGCCCTCGTCTCGCGTGGGACGTAGCTCCTCCCTCCGCGTCTGAGGCACAACGGGCTCTGCCGGTGCCCGGTGATGAAGGTTTCGAAAGAAAGCATGTTTCGCCTCCGAAAAGGGACGACGATCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGTTAGCGGTCAAGTGTCCTCTGAATACAAGATTTTAATTTTTTTGTCACTGTGCTTGTGTCATTCAGCATATTGCTAGTGCTGTAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACCAGAGAATATGTGGCTATCAAGGTAGTTAGAAGCATACGGAAATATCGGGATGCAGCAATGCTCGAGATTGATGTGCTTCAACAACTAGCGAAGAATGATAGAGGAAGCTCGCGATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAACAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGAAATGTGGACTCTTCAAGGTCCTCCTTGACTGAATTGTTACATGGCTTATTAACATATGATCCTACCAAACGCATTACAGCTCGCCAAGCCCTCGATCATCCCTTCTTTAGGAATCCTACTTAGGAAAACCAGATTGACCCTTGTTTTGGAATGACTTCCATTTTAAAGATTCAGTTGCACAGGCTACAGCTTTGAATGTATCCATTTCTTTATTATTTATAGCAGTGGCTCAGTGGTGTTGAAAATATATTTTAATTTTATCATTCTTTGTTTTCATTTTGTTCATTTTTCAAAACTATTATTCAACTACGTCAGTTT

Coding sequences of Glyma06g08480

Limit To All Plant Sequences

>Glyma06g08480.1   sequence type=CDS   gene model=Glyma06g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCTGTCGAAAAAATTCACATCGAAAGGGAACGAACACGGAAACGCCCTCGTCTCGCGTGGGACGTAGCTCCTCCCTCCGCGTCTGAGGCACAACGGGCTCTGCCGGTGCCCGGTGATGAAGGTTTCGAAAGAAAGCATGTTTCGCCTCCGAAAAGGGACGACGATCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACCAGAGAATATGTGGCTATCAAGGTAGTTAGAAGCATACGGAAATATCGGGATGCAGCAATGCTCGAGATTGATGTGCTTCAACAACTAGCGAAGAATGATAGAGGAAGCTCGCGATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAACAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGAAATGTGGACTCTTCAAGGTCCTCCTTGACTGAATTGTTACATGGCTTATTAACATATGATCCTACCAAACGCATTACAGCTCGCCAAGCCCTCGATCATCCCTTCTTTAGGAATCCTACTTAG

>Glyma06g08480.2   sequence type=CDS   gene model=Glyma06g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGAGATTGATGTGCTTCAACAACTAGCGAAGAATGATAGAGGAAGCTCGCGATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAACAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGAAATGTGGACTCTTCAAGGTCCTCCTTGACTGAATTGTTACATGGCTTATTAACATATGATCCTACCAAACGCATTACAGCTCGCCAAGCCCTCGATCATCCCTTCTTTAGGAATCCTACTTAG

Predicted protein sequences of Glyma06g08480

Limit To All Plant Sequences

>Glyma06g08480.1   sequence type=predicted peptide   gene model=Glyma06g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVEKIHIERERTRKRPRLAWDVAPPSASEAQRALPVPGDEGFERKHVSPPKRDDDREGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMLEIDVLQQLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRISSDEMQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPIPEHMICRSNKGAEKYFKRGSRLRWPEGAVSRESISAVKKLGHLKDIVSRNVDSSRSSLTELLHGLLTYDPTKRITARQALDHPFFRNPT*

>Glyma06g08480.2   sequence type=predicted peptide   gene model=Glyma06g08480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEIDVLQQLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRISSDEMQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPIPEHMICRSNKGAEKYFKRGSRLRWPEGAVSRESISAVKKLGHLKDIVSRNVDSSRSSLTELLHGLLTYDPTKRITARQALDHPFFRNPT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain