Glyma06g08450 - SoyBase

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Report for Sequence Feature Glyma06g08450

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6164918
stop:	6167584
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24840	AT	Annotation by Michelle Graham. TAIR10: tRNA (guanine-N-7) methyltransferase \| chr5:8533897-8534652 REVERSE LENGTH=251	SoyBase	E_val: 2.00E-144	ISS
GO:0006400	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA modification	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0015946	GO-bp	Annotation by Michelle Graham. GO Biological Process: methanol oxidation	SoyBase	N/A	ISS
GO:0019415	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetate biosynthetic process from carbon monoxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA (guanine-N7-)-methyltransferase activity	SoyBase	N/A	ISS
KOG3115	KOG	Methyltransferase-like protein	JGI		ISS
PTHR23417	Panther	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE	JGI		ISS
PTHR23417:SF1	Panther	TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE	JGI		ISS
PF02390	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_B9SUG0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: tRNA (Guanine-n(7)-)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SUG0_RICCO	SoyBase	E_val: 9.00E-161	ISS
UniRef100_I1K976	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K976_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08450

Paralog	Evidence	Comments
Glyma04g08330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g080300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08450

Limit To All Plant Sequences

>Glyma06g08450.3   sequence type=transcript   gene model=Glyma06g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAACCTACACAATTCCCTCCTTCACTTCTGCTTCAACAATTCAAAGCCTGCTTCTGTTTCGGTTTTACCTTTCTTCGTTTCGTTGCTGCTACAACCGCTACTTGTAGAGCCTCAGCAAAGTCACAGAATTCAGAATCAGTATCGAAGAATTCAATAGTTTTCTCCAGGATTCTCTCTGTTAGGAACTCTTACTTTGCCATTCAATCCACACCTCAGTCAGAAATTAACAAATTTGTGACAGATGTATGCTTTTAAATGTGTATATGGACATTCAACTTGTAATAATGAGGATATTCCTTCATGGGGCAGTATGATTTCAAGTTTTCAACTTATGATATCTGCTAAAGAAATTTGAGTACTTCAGAAGTTGCAGCACGAAGAGTTTGAATAAAGAGACATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAGATTTCTGCTGCCTAATCTAGTGCGCTGCAAATTAAAATTAAAAAATGCTTGTTGCATGCTAAGCATTGGATTGATCTGTTTACTTTACTGGTATACGATTGGCTTCATTAGGATCACATGGCCTTTGCCATCTTTTATTTGCTATGTGCTTATTTTCATGTTTAACTGAAATTATTCGATTTTGAAAGCAAAACTATAATGGAGAGTGTTTTGTTTGTTTTTTTATATCAGCAA

Coding sequences of Glyma06g08450

Limit To All Plant Sequences

>Glyma06g08450.2   sequence type=CDS   gene model=Glyma06g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAG

>Glyma06g08450.3   sequence type=CDS   gene model=Glyma06g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAAGACTGAGGTAAATCCAACTATCAGCAAGTCAACTGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAATCCGCTGAGTGACTCTCACTTCCCTGTGCCAATTTCACCCAGCCATGTTGACTATTCCCTCCATTACCCTCAGTTATTGCCCTCGTCTGGTCAAGCTGATACTTTCAAAAAGATCCAGTTTGCTGATGTTGGTTGTGGTTTTGGAGGGCTGCTCATAAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATTGGAATGGAACTTAGAGACAAAGTGACTGAGTACGTCAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTACGAACTAACTCCATGAAGTATATTCCCAATTACTTTGAGAAAGGAACGCTCTCAAAGATGTTTTTCTTGTTTCCTGATCCTCATTTTAAAGAGAAGAATCATCGCCGTAGGGTTATCAGTCCATTCTTGCTAGATGAGTATGCTTATGTTCTCGAGGTTGGTGGAATTATATACACAATAACAGACGTAGAAGAGCTTGGGTACTGGATGAAGTCTTGTCTGGAGAATCACCGCATGTTCGAAGCTTTGACTGATAAAGAACTTGAAGCAGATGCAGTTGTGAAGCTTTTAAGTTCTGCTACTGAAGAAGGCCAAAAGGTTGCTAGAAATGGGGGACAAACTTTCCAGGCTATATTCAGACGCATTGTACCATCGGATCAAGCATCCTAG

Predicted protein sequences of Glyma06g08450

Limit To All Plant Sequences

>Glyma06g08450.2   sequence type=predicted peptide   gene model=Glyma06g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKTEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLLPSSGQADTFKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVGGIIYTITDVEELGYWMKSCLENHRMFEALTDKELEADAVVKLLSSATEEGQKVARNGGQTFQAIFRRIVPSDQAS*

>Glyma06g08450.3   sequence type=predicted peptide   gene model=Glyma06g08450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKTEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLLPSSGQADTFKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVGGIIYTITDVEELGYWMKSCLENHRMFEALTDKELEADAVVKLLSSATEEGQKVARNGGQTFQAIFRRIVPSDQAS*

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