Glyma06g08440 - SoyBase

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Report for Sequence Feature Glyma06g08440

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6151812
stop:	6154750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24430	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 38 \| chr2:10383517-10386386 REVERSE LENGTH=316	SoyBase	E_val: 3.00E-110	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B9SPR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SPR1_RICCO	SoyBase	E_val: 1.00E-162	ISS
UniRef100_I1K975	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K975_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08440

Paralog	Evidence	Comments
Glyma04g08320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g080200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08440

Limit To All Plant Sequences

>Glyma06g08440.2   sequence type=transcript   gene model=Glyma06g08440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGTCTATATGCAACTTGAAGGTGAAGACCCACATTTGGTGGAAGCTTCAGAAACACACTCCTCCTTGTTTTTCTTCGTTACCTTTGTACTTAAATTCCCTACCCTCCATGCACGGTGATTAGTAGTAATTAGAAAGCTCTCTCCCCTCATTGATCTTCTTTAAATTTATCCTACTTTGCAGTATCTCTCAAATCATTGTTTCGTTTCCAAGTGAACCATATAACTTATATAAAGCATCAAAACCTGATTCAAGAAGAGTTTGTTTCTCCATGCAAAAGGAAAAGGAAGCAATTGTCAAGGAGGGGACTACGGAAATAGAAATGGAAGGAACCCGTGCAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCACCCTACCGATGAAGAACTTGTCACATGCTATCTGGTAAATAAGATATCGGATTCTAATTTTACAGGGAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACGGGTGTGAGAACAAATCGAGCAACTAACGCCGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCTTCAACAGTGAAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATATCGCATTCACTCAAAATCCAGCTATAGAACTAACAGGGATGAATGGGTGGTGTGCCGGGTATTCAAGAAAAGTGGTAATGCGAAGAAGTACCCTTCTTCCAACCATGCAAGAGCAGTGAATCCATACAGCTTGGAAATAGAACCAAATATTTTGCCTCCGCTAATGATGCAACTGGGAGATCCTGGTGCTCATTTCCTTTATGGAAGAAACTACATGAACAGTGCTGAGTTAGCAGAACTTGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGTAGTGTCAACCTGCCAATTCAATCCCACTTGAGCTACCCTACATCATCATCGACAGGAGGAGGATTCACCATTTCAGGGCTCAATTTGAACCTTGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTAAGGCCAATGCAACCTTCTCCTGCTCCTGTTCATACGATGGCTCAAGTACTTGATGCCAATTCCAGCATGATGACAACCAGTTCTCTTGGTGCTGAGAATGTAGGTTATGGAGCAGAAATGAGTAACTTGAATTTGCATGGGAATAGGTATATGGGCGTCGATCACTGCATGGATCTAGACAACTATTGGCCTTCCTACTAAATTATGATGAGACACCCTTATTTAGTTTATTAGGCATAATCTAGTACCTAGTACTATTACTATATATATAAGTTTAGTTGGATCAGCTACCATAAAATTGAAGTTCTGCTATTTTCTTGTGTTTCCAAGTTTTATGCCGGAAAATGACGACCGGTATCCTAGTGATCGTGTACCTTTTCAATCAAGTAACATTTTGAATGTTTGTTTATCGATTACTACTGTCTTTTCTTTATTGAACATCACTAGCTATATGTTACGTTATTTGTCCCCGATTATAATTCGC

Coding sequences of Glyma06g08440

Limit To All Plant Sequences

>Glyma06g08440.1   sequence type=CDS   gene model=Glyma06g08440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGGAAAAGGAAGCAATTGTCAAGGAGGGGACTACGGAAATAGAAATGGAAGGAACCCGTGCAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCACCCTACCGATGAAGAACTTGTCACATGCTATCTGGTAAATAAGATATCGGATTCTAATTTTACAGGGAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACGGGTGTGAGAACAAATCGAGCAACTAACGCCGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCTTCAACAGTGAAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATATCGCATTCACTCAAAATCCAGCTATAGAACTAACAGGCAGGATGAATGGGTGGTGTGCCGGGTATTCAAGAAAAGTGGTAATGCGAAGAAGTACCCTTCTTCCAACCATGCAAGAGCAGTGAATCCATACAGCTTGGAAATAGAACCAAATATTTTGCCTCCGCTAATGATGCAACTGGGAGATCCTGGTGCTCATTTCCTTTATGGAAGAAACTACATGAACAGTGCTGAGTTAGCAGAACTTGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGTAGTGTCAACCTGCCAATTCAATCCCACTTGAGCTACCCTACATCATCATCGACAGGAGGAGGATTCACCATTTCAGGGCTCAATTTGAACCTTGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTAAGGCCAATGCAACCTTCTCCTGCTCCTGTTCATACGATGGCTCAAGTACTTGATGCCAATTCCAGCATGATGACAACCAGTTCTCTTGGTGCTGAGAATGTAGGTTATGGAGCAGAAATGAGTAACTTGAATTTGCATGGGAATAGGTATATGGGCGTCGATCACTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA

>Glyma06g08440.2   sequence type=CDS   gene model=Glyma06g08440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAAGGAAAAGGAAGCAATTGTCAAGGAGGGGACTACGGAAATAGAAATGGAAGGAACCCGTGCAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCACCCTACCGATGAAGAACTTGTCACATGCTATCTGGTAAATAAGATATCGGATTCTAATTTTACAGGGAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACGGGTGTGAGAACAAATCGAGCAACTAACGCCGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCTTCAACAGTGAAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATATCGCATTCACTCAAAATCCAGCTATAGAACTAACAGGGATGAATGGGTGGTGTGCCGGGTATTCAAGAAAAGTGGTAATGCGAAGAAGTACCCTTCTTCCAACCATGCAAGAGCAGTGAATCCATACAGCTTGGAAATAGAACCAAATATTTTGCCTCCGCTAATGATGCAACTGGGAGATCCTGGTGCTCATTTCCTTTATGGAAGAAACTACATGAACAGTGCTGAGTTAGCAGAACTTGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGTAGTGTCAACCTGCCAATTCAATCCCACTTGAGCTACCCTACATCATCATCGACAGGAGGAGGATTCACCATTTCAGGGCTCAATTTGAACCTTGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTAAGGCCAATGCAACCTTCTCCTGCTCCTGTTCATACGATGGCTCAAGTACTTGATGCCAATTCCAGCATGATGACAACCAGTTCTCTTGGTGCTGAGAATGTAGGTTATGGAGCAGAAATGAGTAACTTGAATTTGCATGGGAATAGGTATATGGGCGTCGATCACTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA

Predicted protein sequences of Glyma06g08440

Limit To All Plant Sequences

>Glyma06g08440.1   sequence type=predicted peptide   gene model=Glyma06g08440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKEKEAIVKEGTTEIEMEGTRAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSETSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNRQDEWVVCRVFKKSGNAKKYPSSNHARAVNPYSLEIEPNILPPLMMQLGDPGAHFLYGRNYMNSAELAELARVLRGGGSTSSVNLPIQSHLSYPTSSSTGGGFTISGLNLNLGGGGATATTQPILRPMQPSPAPVHTMAQVLDANSSMMTTSSLGAENVGYGAEMSNLNLHGNRYMGVDHCMDLDNYWPSY*

>Glyma06g08440.2   sequence type=predicted peptide   gene model=Glyma06g08440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKEKEAIVKEGTTEIEMEGTRAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSETSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNRDEWVVCRVFKKSGNAKKYPSSNHARAVNPYSLEIEPNILPPLMMQLGDPGAHFLYGRNYMNSAELAELARVLRGGGSTSSVNLPIQSHLSYPTSSSTGGGFTISGLNLNLGGGGATATTQPILRPMQPSPAPVHTMAQVLDANSSMMTTSSLGAENVGYGAEMSNLNLHGNRYMGVDHCMDLDNYWPSY*

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