Glyma06g08430 - SoyBase

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Report for Sequence Feature Glyma06g08430

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6139793
stop:	6147782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31340	AT	Annotation by Michelle Graham. TAIR10: myosin heavy chain-related \| chr4:15205662-15208950 FORWARD LENGTH=437	SoyBase	E_val: 3.00E-162	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0042732	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
KOG1003	KOG	Actin filament-coating protein tropomyosin	JGI		ISS
UniRef100_I1K974	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K974_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GUN1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4G31340 protein n=1 Tax=Arabidopsis thaliana RepID=Q8GUN1_ARATH	SoyBase	E_val: 1.00E-159	ISS

Expression Patterns of Glyma06g08430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08430

Paralog	Evidence	Comments
Glyma04g08310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g080100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08430

Limit To All Plant Sequences

>Glyma06g08430.1   sequence type=CDS   gene model=Glyma06g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCTCCGAAGCTCTTCGTCTTTGCGCTTTCTGTAACCCTAATTTTCGCCATCGTTGGGGCCGAAGCCGATATTTCCATCGAAGGAAGCACTCCAGAGCCTGATACCTCCGCCATCAGGATCCAATTAGATCAACTCAATTCCAAGATCCAAATTCTCGAGTCTCAAATCAGCGAAAAGTTGGAAGAAGTGAAGAAGAAGGACGAAATTATAGCAGAAAAAGAAAAGTCCATTGAAGATAAATCAATTACCATACAATCCTTGCAGAATGAGATTGCTTCTCTCCAGAAAAAAGGGTCACTGGATGCTGAGGAGCAGGTTGGAAAGGCTCATGCACGTGCTGGTGAACTACAGAAGCAGGTGGACAAGCTTAAAAGGGAACTAGAAACACAAAACAAGGAGAAAGTGAACTGGGAAACTCGAGTACCTGAGTTAGAGAAAAAGATTCATGACTTGAACTCAAAATTAGAAGATCTTCAAAAGATAAATGAGGAACAGAAGAAAAAAATTCAAAAAACTGAACGTGCTCTTAAAGTTGCTGAGGAAGAAATGGTGAAGGCAAAGTTTGAGGCTACTGCCATAGAAAAAGAGCTGAGGGAGACTCATGGTGCTTGGCTTCCCCCTTGGCTTGCTGTTCACTATATTCATAGTAAGTCTTTTGTTGATAGTCATTGGAACAAACATGGGAAACCTGCTTTGGAAATGGTTACTCAAAAGGCCCTAGAGAAAAAGGCACAAGCTGGAAAGTGGGCTGAACCTCATGTGGAAACCATTAAAACTAAATGGGTCCCAGCTGTAAAAGAACAGTGGTCTGTGGTGAAGACAAATGCTGAACCTCATGTGCAATTATTGACCACGAAAACTGTTGAAGTTTACGAGGCATCAAAGAATGCAATTTCTCCCCACTTAAGCAAGGCAAAAGAATTTGTAGATCCTTATTATCAGGAAGCTAGAAAGTTCAGCAAGCCATACATTGATCAGATTGCTATTGCAGCTAAACCTCATGTTGATAAAGTACAGGTAGTTTTGAAGCCCTACACAAAGGAGGTTGTTCGCACTTATGGGAAGTTTTTGGAATCAGCTACTACATATCATCGCCAGGTCCAAGCTTCTGTCCAAGAGACACTGAAAAAGCACGAGCTTACTAGACCTCTTGCTACTAAAGAGTTGGAATGGTTTGCGGCCTCTGCCCTTTTGGCTTTACCTATTATTTTAGTGGCTAGAGTGTTTTCAGCTGTTTTCTGTAGCAAAAAAGTGAATAAACCTGCTCGAAATGGAAACAATCACCATGCACGACGTAAACATAAGCGAGGGCATCTAGACAAGCACACAACATGA

Predicted protein sequences of Glyma06g08430

Limit To All Plant Sequences

>Glyma06g08430.1   sequence type=predicted peptide   gene model=Glyma06g08430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPKLFVFALSVTLIFAIVGAEADISIEGSTPEPDTSAIRIQLDQLNSKIQILESQISEKLEEVKKKDEIIAEKEKSIEDKSITIQSLQNEIASLQKKGSLDAEEQVGKAHARAGELQKQVDKLKRELETQNKEKVNWETRVPELEKKIHDLNSKLEDLQKINEEQKKKIQKTERALKVAEEEMVKAKFEATAIEKELRETHGAWLPPWLAVHYIHSKSFVDSHWNKHGKPALEMVTQKALEKKAQAGKWAEPHVETIKTKWVPAVKEQWSVVKTNAEPHVQLLTTKTVEVYEASKNAISPHLSKAKEFVDPYYQEARKFSKPYIDQIAIAAKPHVDKVQVVLKPYTKEVVRTYGKFLESATTYHRQVQASVQETLKKHELTRPLATKELEWFAASALLALPIILVARVFSAVFCSKKVNKPARNGNNHHARRKHKRGHLDKHTT*

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