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Report for Sequence Feature Glyma06g08400

Feature Type:gene_model
Chromosome:Gm06
Start:6129362
stop:6130121
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20780AT Annotation by Michelle Graham. TAIR10: calmodulin like 42 | chr4:11133309-11133884 REVERSE LENGTH=191 SoyBaseE_val: 4.00E-15ISS
GO:0010091GO-bp Annotation by Michelle Graham. GO Biological Process: trichome branching SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF43Panther CALMODULIN RELATED JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_G7J2W3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein CML42 n=1 Tax=Medicago truncatula RepID=G7J2W3_MEDTR SoyBaseE_val: 9.00E-60ISS
UniRef100_I1K973UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K973_SOYBN SoyBaseE_val: 8.00E-124ISS

Expression Patterns of Glyma06g08400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08400
ParalogEvidenceComments
Glyma04g08300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g079900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08400
>Glyma06g08400.1   sequence type=CDS   gene model=Glyma06g08400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATAGCAGAAGCATGCTCCAGATTCCTTGGTGACTTTTTACAAGCATTGAAATGCTCCTCAAAAAGCTCAGTGTCTCACCTTGATCATAATTATCATGACCCTTCTTCATGCAAGCCCCAGAATGTGCTCAAACTTGATGACAAGATGGTTGGTGCCCTTGTCAGTGTTTTTGGCATGGAAACCAATGGGAGAATCAAGAAGCTTGGTTTGATGTATGATAATAAGCCCTCATCATCATCAGGGTTTGAGCTAGCTGAGGGTGGCTTGCTTGATGATGAAGTGCCTGTGGAAGAGGTTCTTGGTGAGTTGGAGGACATGTCAAAACGCAGTGAGCTTTTGCATGAAGCCTTCAAGATCTTTGATGAGGATGGGGATGGATACATAGATGCAATGGAGTTGAAGAAGGTGCTTGATTGCTTGGGGTTGGACAAGGGTTGGGATATGAGTGCTATTGAGAAGATGGTCAAGGTTGCTGATTTGAACTTTGATGGCAAGGTTTATTTTGGTGAGTTTGAATTGATGATGGGGTAG
Predicted protein sequences of Glyma06g08400
>Glyma06g08400.1   sequence type=predicted peptide   gene model=Glyma06g08400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIAEACSRFLGDFLQALKCSSKSSVSHLDHNYHDPSSCKPQNVLKLDDKMVGALVSVFGMETNGRIKKLGLMYDNKPSSSSGFELAEGGLLDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKKVLDCLGLDKGWDMSAIEKMVKVADLNFDGKVYFGEFELMMG*






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