Glyma06g08290 - SoyBase

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Report for Sequence Feature Glyma06g08290

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6075697
stop:	6077574
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25890	AT	Annotation by Michelle Graham. TAIR10: Oleosin family protein \| chr2:11037435-11037884 FORWARD LENGTH=149	SoyBase	E_val: 3.00E-36	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0012511	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF01277	PFAM	Oleosin	JGI		ISS
UniRef100_I1K966	UniRef	Annotation by Michelle Graham. Best UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1K966_SOYBN	SoyBase	E_val: 3.00E-114	ISS
UniRef100_I1K966	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oleosin n=1 Tax=Glycine max RepID=I1K966_SOYBN	SoyBase	E_val: 3.00E-114	ISS

Expression Patterns of Glyma06g08290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08290

Paralog	Evidence	Comments
Glyma04g08220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g078700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08290

Limit To All Plant Sequences

>Glyma06g08290.2   sequence type=CDS   gene model=Glyma06g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGCCGCCACGACATGCAAAGTACCCTCACCTCTTGCCGCGTAACCTCTCACACCTCCTCATACACTACTATATACCTCTCTCACTCAATACTCTCATCAACACTTGGTTTAGCAAGAGAAAAAATACCAACCATGGCAACCATTTCTACTGATCAACCAAGAGGATCCTACTCCTATGGAACCTCCTATGGAGCACCCTATGGAACCACCTATGAGACCAACAGCAGCATTAACAACCCTCCTTCACGCCAAACCGTGAAGTTCATAACTGCTGCAACTATTGGCATCACACTCTTACTCCTGTCTGGGTTGACCCTCACAGGCACTGTCATAGGTTTGATCATTGCAACCCCTCTTCTTGTTATCTTCAGCCCCATCCTTGTCCCTGCTGCGTTTGTGCTGTTCCTGGTTGCTTCTGGCTTTTTGTTCTCTGGGGGCTGTGGTGTGGCTGCCATTGCTGCTTTATCTTGGATTTACAACTACGTTTCTGGGAACCAGCCTGCGGGTTCTGACACCCTTGACTATGCAAAAGGGTACCTTACTGATAAGGCAAGGGATGTGAAGGAGAGGGCAAAGGATTATGGAAGTTATGCTCAGGGTAGAATTAATGAGGCCACACAAGGAACTTATTAG

Predicted protein sequences of Glyma06g08290

Limit To All Plant Sequences

>Glyma06g08290.2   sequence type=predicted peptide   gene model=Glyma06g08290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSRHDMQSTLTSCRVTSHTSSYTTIYLSHSILSSTLGLAREKIPTMATISTDQPRGSYSYGTSYGAPYGTTYETNSSINNPPSRQTVKFITAATIGITLLLLSGLTLTGTVIGLIIATPLLVIFSPILVPAAFVLFLVASGFLFSGGCGVAAIAALSWIYNYVSGNQPAGSDTLDYAKGYLTDKARDVKERAKDYGSYAQGRINEATQGTY*

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