Glyma06g08240 - SoyBase

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Report for Sequence Feature Glyma06g08240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6055401
stop:	6058257
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21080	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 141 Blast hits to 141 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 140; Viruses	SoyBase	E_val: 1.00E-152	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12056	PFAM	Protein of unknown function (DUF3537)	JGI		ISS
UniRef100_D7LAY2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Extracellular ligand-gated ion channel n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LAY2_ARALL	SoyBase	E_val: 8.00E-78	ISS
UniRef100_I1K962	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K962_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08240

Paralog	Evidence	Comments
Glyma04g08181	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g078300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08240

Limit To All Plant Sequences

>Glyma06g08240.1   sequence type=CDS   gene model=Glyma06g08240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTTCCACAGAATCAGACAACGCCATTATCATCGACATTGATTCCTCTGTCAAAACACCATCGTTTGTCGAAAACCACCCTAACGAAGAAAAACACCAACTCAATGTTCCCTTCCTCCTCCGTCCATCTTATGCGACACACGAACTGCGAAACCTTCGCAGGAGCCTCCAATGGTGTGCTCTCGACCACTCTTCCCTCGTTGGACAGCTCATTTCCTATGTCGTCTTCATATTCCTCACCATCGCTGTCCCTCTCTTCACTTCTCTCTTCGTTCATGTCCCCTCTTCATCTTCTCAACTCGACCCTTTCAACTTCAACAAGCTCCTTCAATTACCGCAATCAGCCCTCGCCGTTATCGCATTCTTCACTCTCTCCCGTTTCTTTCCAAGGCATGGCCTTAGGCAGCTTCTATTCCTAGATGTGTTACAAGATGACTCAACGTATGTTCGACGTGGGTACACGCGCGAGCTTCAGAAAGCGTTCAGATACTTAGCGTGCATGATATTACCTTCCTTTTTCGTAGAACTTGTTCACAAAATTATCTTCTTTTCTAGCGTCGAAATTTCTATCCCATGTGGGACCTCTCTGAACTGGGTTGTGTTTGTTTTAGTGTTGGTTTCCTGGGTTTACAGAACGGGGTTGTTCTTGTTGGCGTGTGTGCTCTTTAGGCTTACCTGTGAGCTTCAGATACTGAGGTTTGAAGGGCTTCGCAAGCTTTTTGAAGGGTGTGGGTCTGATGCAAACATGATATTTAGAGAGCACGTGAGAATTAGGAGGCAATTGTGGATCACGAGTCATAGGTACAGGTTCTTTATAATTACTTGTTTGGTGACAATCACGATTAGCCAGTTGGGTTCTCTCTTGCTGGTTTTGGAATCCAAATCTGCCACCACCTTCTTCAATTCTGGTGACCTTGTGATTTGTTCGGCTGTGCAGTTATGTGGGTTCTTCTTGTGCCTTATGGGTGCGGCAAGAATCACACATAGAGCACAAGGGATAGTGTCAATTGCCACAAAGTGGCACATGGTGGTGACCAATGCATCTGCTGAATCTGAACACTGGAAAACCCAGATGCCAGAGGGGCTACCCAGTCCTACTGCCAGTGATTCAGATTCTTCGGACATATACATATCAGTAACCACACAAGGACCTTCTTTCCAAACTAGGCAAGCATTAGTGACGTATTTACAGCACAACTATGGAGGAATAACACTATTTGGGTTTGTGGTTGATCGAGGTTTACTTCATACTCTCTTTGCCTTTGAGTTCTCTATGGTGCTTTGGATTTTGAGTATGGTGGCTGTCTAG

Predicted protein sequences of Glyma06g08240

Limit To All Plant Sequences

>Glyma06g08240.1   sequence type=predicted peptide   gene model=Glyma06g08240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPSTESDNAIIIDIDSSVKTPSFVENHPNEEKHQLNVPFLLRPSYATHELRNLRRSLQWCALDHSSLVGQLISYVVFIFLTIAVPLFTSLFVHVPSSSSQLDPFNFNKLLQLPQSALAVIAFFTLSRFFPRHGLRQLLFLDVLQDDSTYVRRGYTRELQKAFRYLACMILPSFFVELVHKIIFFSSVEISIPCGTSLNWVVFVLVLVSWVYRTGLFLLACVLFRLTCELQILRFEGLRKLFEGCGSDANMIFREHVRIRRQLWITSHRYRFFIITCLVTITISQLGSLLLVLESKSATTFFNSGDLVICSAVQLCGFFLCLMGAARITHRAQGIVSIATKWHMVVTNASAESEHWKTQMPEGLPSPTASDSDSSDIYISVTTQGPSFQTRQALVTYLQHNYGGITLFGFVVDRGLLHTLFAFEFSMVLWILSMVAV*

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