Glyma06g08230 - SoyBase

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Report for Sequence Feature Glyma06g08230

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6046516
stop:	6050721
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20325	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:10980124-10982426 FORWARD LENGTH=277	SoyBase	E_val: 9.00E-114	ISS
KOG4705	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13383	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13383:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF09468	PFAM	Ydr279p protein family (RNase H2 complex component)	JGI		ISS
UniRef100_A8MRG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease H2 subunit B n=1 Tax=Arabidopsis thaliana RepID=A8MRG8_ARATH	SoyBase	E_val: 4.00E-111	ISS
UniRef100_I1K961	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K961_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g08230 not represented in the dataset	Glyma06g08230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08230

Paralog	Evidence	Comments
Glyma04g08161	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g078200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08230

Limit To All Plant Sequences

>Glyma06g08230.4   sequence type=transcript   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAGGCAACATTCCCGCGCGCGCTCCACTTGGCGATTCAGTGCCACTCTCACTGGTCGCTCGTTAAACTCCCTTCACTCTCAAATTTAAAGTTACCGGGGGAGGGAACGATCGGTGACTGGCTGTGTTAGGGCTTTTGAATCCTCTTCTGCTAAACCCATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAGGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTATGCTAGTAGTTTCTGAAGTCAAAGAAATTGGATCTTCAAAATTTTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCCATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTGACCATCTTAAGTTAAATATACTCGAGGTTACTGGAAAAGCACAAGTAAATGCCGAAGAAAGTAACCCAGGTTTACGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAACTGATAAATTATTAACCCATGGGTCATTGTCATATTGTATCATTTTCTAGACCTGCAAGTAGTGGATAAGCATTGAGTCATCTCCTGGTTTGTACCGTCCGATTTATGCTATTTCTCTCTCTCTCTCTCTCTCTCGATTTTATTATTATTTGTCAGCAATTTCAATTTCACCTGCAGTTTATATCATCCAATTTAATATCCTTTTCCTTACCTTTTTAAGGCCTTATCTCATCTGACCTATCTCATCGGTCATCTCATTGTAGACAATGCTACTTTTTTTTTTTTATCTCATCATTTCTCGAACT

>Glyma06g08230.5   sequence type=transcript   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAGGCAACATTCCCGCGCGCGCTCCACTTGGCGATTCAGTGCCACTCTCACTGGTCGCTCGTTAAACTCCCTTCACTCTCAAATGTATTTAAAGTTACCGGGGGAGGGAACGATCGGTGACTGGCTGTGTTAGGGCTTTTGAATCCTCTTCTGCTAAACCCATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAGGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTATGCTAGTAGTTTCTGAAGTCAAAGAAATTGGATCTTCAAAATTTTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCCATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTGACCATCTTAAGTTAAATATACTCGAGGTTACTGGAAAAGCACAAGTAAATGCCGAAGAAAGTAACCCAGGTTTACGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAACTGATAAATTATTAACCCATGGGTCATTGTCATATTGTATCATTTTCTAGACCTGCAAGTAGTGGATAAGCATTGAGTCATCTCCTGGTTTGTACCGTCCGATTTATGCTATTTCTCTCTCTCTCTCTCTCTCTCGATTTTATTATTATTTGTCAGCAATTTCAATTTCACCTGCAGTTTATATCATCCAATTTAATATCCTTTTCCTTACCTTTTTAAGGCCTTATCTCATCTGACCTATCTCATCGGTCATCTCATTGTAGACAATGCTACTTTTTTTTTTTTATCTCATCATTTCTCGAACT

Coding sequences of Glyma06g08230

Limit To All Plant Sequences

>Glyma06g08230.2   sequence type=CDS   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAGGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTATGCTAGTAGTTTCTGAAGTCAAAGAAATTGGATCTTCAAAATTTTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCCATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTGACCATCTTAAGTTAAATATACTCGAGGTTACTGGAAAAGCACAAGTAAATGCCGAAGAAAGTAACCCAGGTTTACGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAACTGA

>Glyma06g08230.4   sequence type=CDS   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAGGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTATGCTAGTAGTTTCTGAAGTCAAAGAAATTGGATCTTCAAAATTTTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCCATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTGACCATCTTAAGTTAAATATACTCGAGGTTACTGGAAAAGCACAAGTAAATGCCGAAGAAAGTAACCCAGGTTTACGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAACTGA

>Glyma06g08230.5   sequence type=CDS   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGTGTGATAGCGTTCAGGAACCACGGATTCTCGTCGCACCCGATCCTGGTACTGATGGAAATGGTCTGGGACAGATGATATCGCTCCGCCATCCCAAATCTGGAAATGCAACACAATATCTGTTTGTAAATGGAATGCTTCAGGAACTTCAGTGGTTTAAGAACTTGTATGGATCTTGGTTTTTGGGAGATTATATAACTGAAGATGGTCGGATGTATTTATCCACACCAATTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTATGCTAGTAGTTTCTGAAGTCAAAGAAATTGGATCTTCAAAATTTTTCAGACTTGATGACTCAAAGGTTCTACGTTGGCTGTGCTATAAGGTTTGTCAGCTAAAACAGACACTACCCAAATTGGACAAAAACTATGCTGTTCAATCAGAGAAAGACACATTGATTGATGCAGTCTCCATATTAGGAGAGTATTTGAAGGAAAAGCCTTGGTTGCAGCTTTTGTGTGACCATCTTAAGTTAAATATACTCGAGGTTACTGGAAAAGCACAAGTAAATGCCGAAGAAAGTAACCCAGGTTTACGTAATGAATTACAGGAACAGAGTAATGATAAGAAGGCTACAACTGCAAAGAAAGGTAGACAAGCAAAGAAGGTAAAATTGGAGACAGAATCACACAACATCAAAGACATGTTTTCGAGGGCCTCCCGAAAGAAAAACTGA

Predicted protein sequences of Glyma06g08230

Limit To All Plant Sequences

>Glyma06g08230.2   sequence type=predicted peptide   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWCDSVQEPRILVAPDPGTDGNGLGQMISLRHPKSGNATQYLFVNGMLQELQWFKNLYGSWFLGDYITEDGRMYLSTPIDPVFIMLPIFEEARMKKGDDLGRFRQLDEILFIDGYPGYMQLMSVVENCMLVVSEVKEIGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLIDAVSILGEYLKEKPWLQLLCDHLKLNILEVTGKAQVNAEESNPGLRNELQEQSNDKKATTAKKGRQAKKVKLETESHNIKDMFSRASRKKN*

>Glyma06g08230.4   sequence type=predicted peptide   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWCDSVQEPRILVAPDPGTDGNGLGQMISLRHPKSGNATQYLFVNGMLQELQWFKNLYGSWFLGDYITEDGRMYLSTPIDPVFIMLPIFEEARMKKGDDLGRFRQLDEILFIDGYPGYMQLMSVVENCMLVVSEVKEIGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLIDAVSILGEYLKEKPWLQLLCDHLKLNILEVTGKAQVNAEESNPGLRNELQEQSNDKKATTAKKGRQAKKVKLETESHNIKDMFSRASRKKN*

>Glyma06g08230.5   sequence type=predicted peptide   gene model=Glyma06g08230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWCDSVQEPRILVAPDPGTDGNGLGQMISLRHPKSGNATQYLFVNGMLQELQWFKNLYGSWFLGDYITEDGRMYLSTPIDPVFIMLPIFEEARMKKGDDLGRFRQLDEILFIDGYPGYMQLMSVVENCMLVVSEVKEIGSSKFFRLDDSKVLRWLCYKVCQLKQTLPKLDKNYAVQSEKDTLIDAVSILGEYLKEKPWLQLLCDHLKLNILEVTGKAQVNAEESNPGLRNELQEQSNDKKATTAKKGRQAKKVKLETESHNIKDMFSRASRKKN*

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