Glyma06g08220 - SoyBase

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Report for Sequence Feature Glyma06g08220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6041101
stop:	6044602
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31240	AT	Annotation by Michelle Graham. TAIR10: protein kinase C-like zinc finger protein \| chr4:15176637-15177986 REVERSE LENGTH=392	SoyBase	E_val: 1.00E-171	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016209	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antioxidant activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0047134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein-disulfide reductase activity	SoyBase	N/A	ISS
KOG2501	KOG	Thioredoxin, nucleoredoxin and related proteins	JGI		ISS
PTHR13871	Panther	THIOREDOXIN	JGI		ISS
PTHR13871:SF2	Panther	THIOREDOXIN - RELATED	JGI		ISS
PF00578	PFAM	AhpC/TSA family	JGI		ISS
PF07649	PFAM	C1-like domain	JGI		ISS
UniRef100_G7J2U5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleoredoxin n=2 Tax=Medicago truncatula RepID=G7J2U5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K958	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K958_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08220

Paralog	Evidence	Comments
Glyma04g08150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g078100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08220

Limit To All Plant Sequences

>Glyma06g08220.3   sequence type=transcript   gene model=Glyma06g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACGTATCTGCAGCCGCACCCGATAATCCTCAGTTTTGTCAGCACATCCGTTTTACAAGCAGAGCATATGCACCATCTCCAATACATAAAACGACATAACTGAAGACAAATAAATAAAATATCCGTATTGTTTAATCTTTTAAAAGACTAAAAAGAAATGAAAATAAAAGAAAGTAATTATTGTAAGTTTGTAACCATAATATCAGTATATTTTGTTCTGTCTGCAGATGGGTGTTTTGCGAAAATTAACATTAATTTCAGGTTGTAATGATTCAGCTGAATGGCATATAAAAAAAGAACATATTTATAAACCTGAAAGTAAAATTATGATGTGTTTTTCTTTTTTTATATTCTAAAATATTCACTTTTTATGTGTGTATTGAAAATTTTCGGAGCCTTGATCACGCCATATCAACTTGATATTTAAAGCTCTTGAGTGTCCAACGCTCTTCTTCATCATCTCCTTTTGTCTTGGAGACTCAATTTCTTCCTTCTCTCTCTATCTTTATCCGCTGGTATTCTTCTTCAGCTGCAGCTGCAAGGTAATTTTTTTTTACTTTAAAAATTGAAACTTTATCAACCAGTCACTTGTTTATGTGCACTTATCACTTATCACTTGTGTCTACCTTGGATTGCTTTTGCAACAGTTTTATTCTTTTGCCCTCTTAAAAGTGATGCTTTGATGCATGACGCTTATGTTATTAATGAATTCATGCCTAATGATTGGTTTTGATGCAAAAAATCAAAATATTCTCTAAAGAATAATAGATAAGAGTGGTTTTAATCTTCTTCTCCTCCTTTTGGATCCATTAAAATCCACTTGAATGCAAGGATTAGTAACTTAGGAGTTCAGAAATGCTTCTTGGTGTGGTGGAAAATCACGGTGCGACACCGTGGTTTGGTTTTTGGGTTCTCACCGCCAATCCAAAACACTACTAATTACAGTTGGACCCACCTAAACTTTTACACACATGTATGTATTCTAATTCTGGCATGTAAGATATGAGGAGATGTGACTCTTTCTATCTATGTATGAAGCATTTTCCAATTGAGTTATATTAGAATCACTGATCATCAGAACCATTTGCATGTGGTTTAGAGAGTGTGATGCTGTTCCATTTGGAAGGCGTGTACGCAAGCCTTTGTCTGGTTTTAAAGACTGAACTGAAGCACCCTCCTAGGGAATATTCCCCCATATTCATATTTTCATACAGATCATCAAATTTTGTTCTCTTTGTTAAGTCTTGCTTGCTTCCCACTTCAGAAATTTCTGTCCTCCAAGTTTGGTTCACATAGCTATCGTATAAGATTTTTCCACTCTGCTTCCTTCCAATCTTAATTGAAGGACAGCTTCAGACAAATTGTGAAATTTAATAAAGAGCCAAAGATGCCCTTGTACAGAATCTGAACTGCTTTTGTCTCAAGGTCTTTCTGCCCTTGCAATTTGCAAAAGTATTAACTACAGTGAGAGTTAAAATTCAAGGTTTCAAGAAAGCTTATAAAAGGAGAGAACATCTGTTTTTATCAAGCTCTGATGGCAGGGTTAAATTTTGAAGCCACATATACTGACAACCATGATATTCTGAAGATATTTGCAGCTGAAGGTGTTGAATTCCTTTTATCTTGTGAAGGAAAGGTACCCGTATCAGAATGCAATGGGAAAATTATATGCCTATTTTTCACTGCAAACTGGTGTAGACCTTGCAGAGCTTTCATTCCCCGTCTTGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATAAATCTAGAGATCATCTTCATCTCCTTTGACCGTGATGAGGATGGATTTAAAGAACACTTCAAGAACATGCCATGGCTAGCCGTCCCATTTGATGTAAGTTTGCACAGAAGACTGATTGACAGATACCGAATTGATCGAATCCCATCATTCGTTCCATTATGTTCAGATGGCATAACCATTGAAGAAGACTTGATTGGATGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAGGAATTGAAAGCCATAGATATAAGGAAGCGTGAGGAAGCAAACTTGGAAGAATTATTGGGACACAAAGGGTGCCACTTTCTCATCTCAGGAGATGATAGAAAGGTGCCCATATCTGAACTAGCTGGTAAAACCATAGGCCTTTATTTTGGGGCCTATTGGTCTCCTCCTTGCTGCGCCTTCACTGTCCAACTTACCGATGCATACAACAATCTCAAGGTGGAAAAAGGCGACTGCTTTGAGATTGTTTTAATCTCAACAGATAGAGACCTTGAGGAATTCAATGTCAACAAAAGTAGTATGCCCTGGCTTGCTGTCCCATACGAGGACAGGACAAGGCATGACCTTCGAAGAATCTTTGATGTAAAGGGCATTCCTGCTTTGGTTCTCATTGGACCAGATGGCAAAGTCATTAGTGTGAATGGGAAGTTAATGGTCTCCTCATACGGTGCAGAAGCTTTCCCGTTCACCGAATCACGGATAAGAGACCTCGAAGCAGCTCTTAGAAAGGAAGGAGAGGCTTTGCCTCAGCAGGTTGAGGATGTGAAGCATGAACATGTACTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCATGTAAAAAGCAAGGCAAGTTTTGGACATTCTCTTGTGATGTCTGTGACTATGACCTTCACCCAAGTTGTCTAGAAAAGGTCAACAAGGACTAAAGTTGATAGAGAACAGAAACACACAAGTTTGCTACCAATTACATCAACTAGCTATTTTTGTGGTGATGGAAATAAAGTTGTAATACCTAAGAAACTTTAAACACTATATATATCTTTCTATCCTATCAGTATGTTGCCATACCTGCCATTTGAAATTAAGAGTGATTTAAATCAGGTGAGAATTGTTAAGGGAAAGGTCTGAATAGAATTACTCAGTTTAAGAAAGTTTAGTCATACACTATTTAAAAGTATTTATGGTTTTTATTTGGGAGGATGTTTCTGTATGATAATTTTGATACGACTTTATACATTCAAAAGGGTAAATTTAATGGTGGAATAAACAAATGAGTGGAATTTC

Coding sequences of Glyma06g08220

Limit To All Plant Sequences

>Glyma06g08220.2   sequence type=CDS   gene model=Glyma06g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGTTAAATTTTGAAGCCACATATACTGACAACCATGATATTCTGAAGATATTTGCAGCTGAAGGTGTTGAATTCCTTTTATCTTGTGAAGGAAAGGTACCCGTATCAGAATGCAATGGGAAAATTATATGCCTATTTTTCACTGCAAACTGGTGTAGACCTTGCAGAGCTTTCATTCCCCGTCTTGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATAAATCTAGAGATCATCTTCATCTCCTTTGACCGTGATGAGGATGGATTTAAAGAACACTTCAAGAACATGCCATGGCTAGCCGTCCCATTTGATGTAAGTTTGCACAGAAGACTGATTGACAGATACCGAATTGATCGAATCCCATCATTCGTTCCATTATGTTCAGATGGCATAACCATTGAAGAAGACTTGATTGGATGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAGGAATTGAAAGCCATAGATATAAGGAAGCGTGAGGAAGCAAACTTGGAAGAATTATTGGGACACAAAGGGTGCCACTTTCTCATCTCAGGAGATGATAGAAAGGTGCCCATATCTGAACTAGCTGGTAAAACCATAGGCCTTTATTTTGGGGCCTATTGGTCTCCTCCTTGCTGCGCCTTCACTGTCCAACTTACCGATGCATACAACAATCTCAAGGTGGAAAAAGGCGACTGCTTTGAGATTGTTTTAATCTCAACAGATAGAGACCTTGAGGAATTCAATGTCAACAAAAGTAGTATGCCCTGGCTTGCTGTCCCATACGAGGACAGGACAAGGCATGACCTTCGAAGAATCTTTGATGTAAAGGGCATTCCTGCTTTGGTTCTCATTGGACCAGATGGCAAAGTCATTAGTGTGAATGGGAAGTTAATGGTCTCCTCATACGGTGCAGAAGCTTTCCCGTTCACCGAATCACGGATAAGAGACCTCGAAGCAGCTCTTAGAAAGGAAGGAGAGGCTTTGCCTCAGCAGGTTGAGGATGTGAAGCATGAACATGTACTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCATGTAAAAAGCAAGGCAAGTTTTGGACATTCTCTTGTGATGTCTGTGACTATGACCTTCACCCAAGTTGTCTAGAAAAGGTCAACAAGGACTAA

>Glyma06g08220.3   sequence type=CDS   gene model=Glyma06g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGTTAAATTTTGAAGCCACATATACTGACAACCATGATATTCTGAAGATATTTGCAGCTGAAGGTGTTGAATTCCTTTTATCTTGTGAAGGAAAGGTACCCGTATCAGAATGCAATGGGAAAATTATATGCCTATTTTTCACTGCAAACTGGTGTAGACCTTGCAGAGCTTTCATTCCCCGTCTTGTTGAACTTTATGAAACACTGAGAAAGAGGGGAATAAATCTAGAGATCATCTTCATCTCCTTTGACCGTGATGAGGATGGATTTAAAGAACACTTCAAGAACATGCCATGGCTAGCCGTCCCATTTGATGTAAGTTTGCACAGAAGACTGATTGACAGATACCGAATTGATCGAATCCCATCATTCGTTCCATTATGTTCAGATGGCATAACCATTGAAGAAGACTTGATTGGATGCATTGAGGATTATGGTGCTGATGCATTTCCTTTCACAAGGAAGAGGCATGAGGAATTGAAAGCCATAGATATAAGGAAGCGTGAGGAAGCAAACTTGGAAGAATTATTGGGACACAAAGGGTGCCACTTTCTCATCTCAGGAGATGATAGAAAGGTGCCCATATCTGAACTAGCTGGTAAAACCATAGGCCTTTATTTTGGGGCCTATTGGTCTCCTCCTTGCTGCGCCTTCACTGTCCAACTTACCGATGCATACAACAATCTCAAGGTGGAAAAAGGCGACTGCTTTGAGATTGTTTTAATCTCAACAGATAGAGACCTTGAGGAATTCAATGTCAACAAAAGTAGTATGCCCTGGCTTGCTGTCCCATACGAGGACAGGACAAGGCATGACCTTCGAAGAATCTTTGATGTAAAGGGCATTCCTGCTTTGGTTCTCATTGGACCAGATGGCAAAGTCATTAGTGTGAATGGGAAGTTAATGGTCTCCTCATACGGTGCAGAAGCTTTCCCGTTCACCGAATCACGGATAAGAGACCTCGAAGCAGCTCTTAGAAAGGAAGGAGAGGCTTTGCCTCAGCAGGTTGAGGATGTGAAGCATGAACATGTACTGAAATTGGATATGGCCAAAGCATATGTATGTGATTCATGTAAAAAGCAAGGCAAGTTTTGGACATTCTCTTGTGATGTCTGTGACTATGACCTTCACCCAAGTTGTCTAGAAAAGGTCAACAAGGACTAA

Predicted protein sequences of Glyma06g08220

Limit To All Plant Sequences

>Glyma06g08220.2   sequence type=predicted peptide   gene model=Glyma06g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLNFEATYTDNHDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAFIPRLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDVSLHRRLIDRYRIDRIPSFVPLCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKAIDIRKREEANLEELLGHKGCHFLISGDDRKVPISELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKVEKGDCFEIVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVNGKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSCKKQGKFWTFSCDVCDYDLHPSCLEKVNKD*

>Glyma06g08220.3   sequence type=predicted peptide   gene model=Glyma06g08220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLNFEATYTDNHDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAFIPRLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDVSLHRRLIDRYRIDRIPSFVPLCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKAIDIRKREEANLEELLGHKGCHFLISGDDRKVPISELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKVEKGDCFEIVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVNGKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSCKKQGKFWTFSCDVCDYDLHPSCLEKVNKD*

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