Glyma06g08200 - SoyBase

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Report for Sequence Feature Glyma06g08200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6024701
stop:	6032193
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17370	AT	Annotation by Michelle Graham. TAIR10: oligouridylate binding protein 1B \| chr1:5951842-5954825 REVERSE LENGTH=419	SoyBase	E_val: 0	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003730	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA 3'-UTR binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF210	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7J2U1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein n=2 Tax=Medicago truncatula RepID=G7J2U1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K956	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K956_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08200

Paralog	Evidence	Comments
Glyma04g08131	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g077900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08200

Limit To All Plant Sequences

>Glyma06g08200.1   sequence type=CDS   gene model=Glyma06g08200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAGAGGCTTAAGTTGCAGCAACAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAACAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACGTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCGTATGGTTTTGTGGACTACCACGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACGACAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAATGAAGAGAAGAACAATGACAGCCAAAATGCTGTTATGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTTCATTGTCAGTTCCACGCACTGGGGGCTGGGGTGATTGAGGAGGTTCGAGTTCAGAGGGATAAGGGTTTTGGATTTATCAGATACAACACTCATGACGAAGCTGCTCTGGCCATTCAGATGGCTAATGGAAGACTTGTACGTGGGAAGAATATGAAGTGTTCGTGGGGTAGTAAACCAACTCCACCTGGAACAGCTTCAAACCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCCATGGGCATAAACTCTGGGGCATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCGAGACAGCAGCTTATGTACTATCGTTAA

Predicted protein sequences of Glyma06g08200

Limit To All Plant Sequences

>Glyma06g08200.1   sequence type=predicted peptide   gene model=Glyma06g08200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQRLKLQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTTGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDSQNAVMLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFIRYNTHDEAALAIQMANGRLVRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR*

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