Glyma06g08190 - SoyBase

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Report for Sequence Feature Glyma06g08190

Feature Type:	gene_model
Chromosome:	Gm06
Start:	6018582
stop:	6022131
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G31600	AT	Annotation by Michelle Graham. TAIR10: UDP-N-acetylglucosamine (UAA) transporter family \| chr4:15315232-15316909 REVERSE LENGTH=323	SoyBase	E_val: 0	ISS
GO:0015786	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucose transport	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0080147	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell development	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005459	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-galactose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005460	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucose transmembrane transporter activity	SoyBase	N/A	ISS
KOG1444	KOG	Nucleotide-sugar transporter VRG4/SQV-7	JGI		ISS
PTHR11132	Panther	SOLUTE CARRIER FAMILY 35	JGI		ISS
PF08449	PFAM	UAA transporter family	JGI		ISS
UniRef100_C6TCV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCV8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7J2T9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-sugar transporter sqv-7 n=1 Tax=Medicago truncatula RepID=G7J2T9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08190

Paralog	Evidence	Comments
Glyma04g08120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g077800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08190

Limit To All Plant Sequences

>Glyma06g08190.2   sequence type=transcript   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCTGATTTTGAAAGCTTGACTTTGGGTTTAGGTTTTGTTTTACTATTTGATCGGATCGGATCGGATCTTGCTTTCGCCATTAATTACTCATGGAGATCCGTGCCGATGCAGATACCAGCTCCTTTTCAAGTTTGTTCGCAGCTGTGTCATATGGATTTACATCAATGGCCATGGTTTTTATCAACAAGGCTGTTCTTATGCAGTATGCATATTCAATGACTCTCCTCACTCTGCAGCAATTGGTTACCACCTTGCTTATTCACTTTGGTAGAAAGACGGGATACACGAAAGCAAGAGAACTGGATATGACAACGGCCAAGCGACTGCTCCCGCTCTCTATTTTCTATAATGCCAATGTTGCTTTTGCTTTGGCAAGTTTGAAAGGAGTCAATATCCCTATGTATATTGCAATCAAGAGGCTTACGCCACTTGCTGTACTCGTTGCTGGGTGTTTCTCTGGAAAAGGAAAACCTACAACTCAGGTGGCTCTTTCAGTGATATTGACTGCTGCTGGAGTTCTCATTGCTGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCCTTTGTTTCTGTTTTTTTCCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGTGCTGAGGATGGGCTTTCATCCTTGGAAATCATGTTCTATAACAGCTTTTTATCTCTTCCATTTTTGATGTTTCTCATCGTAGCCACTGGGGAATTCCCAAATTCTTTATCCGTATTATTTGCAAAGAGTTATTCTTTCTCATTTTTGGTGATCCTGATTCTTTCATTGGTGATGGGCATCATTCTCAACTTCACCATGTTCTTGTGTACAATTGTTAATTCAGCCTTAACTACAACTATTGTTGGCGTTCTCAAAGGGGTTGTTTCCACGACCTTTGGTTTCTTCTTACTGGGTGGTGTTCAAGTCCATGCTTTGAATGTGAGTGGATTGGTTATCAATACAGCTGGTGGTGTGTGGTATTCATATGCTAAATATCACCAGAGAAAAAGTAAGGCGGTGAAGCTAGTACCAGATGTGGAGGCTCATCGTAAATAGAAGTGGCATCGATAAGTTGTGGTGAAAACTAACGGTTTCATGAATGTTTCTTTACTTTGATTTACTACGATTGTAAACACTGGTAGTTTAGTTTTTTTGGTTTTCTTTTCCTTATAATTTTATAGTAATTGCAGGCTCACATAGTCTGAGTCTAAGATGTAGTAATACTGACATGATATTCGGAATTGAGTAAAATAATTGAACTCTTGTGATTCCAATGCGTACCAGAATATTGTAGGGTGTCTTTTTTATTTTATGCACTGTTCTCTCAACACAGAAATTGAGGTCAACTATGCTGGGCCTTGTATTTGTGGTATAATGTACATGCGTGTCCTGGCTTGCTTCTTCGATTCAATTTTGACTATTATCAGTAATTGTTTTGGTC

>Glyma06g08190.3   sequence type=transcript   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGCAAATGGTAATGAGGTTGGTGCGTGCGAAGTGAGTGACGCGAGTCTCCATCGTGCTCGGATTTTAGGGAACTTCCAACTTGGGGAGTGAGATGCCGATACCAAGCCAGCTGTTTCACTCTTTTCTCTCTTTCCCTTTCTATTATCTCTCCAACTTCACTCCTTTTATTCCCTTATCACTTCTTAGTTCTTTCCTTATCCTTTCGCTATCCAGACATGTAATCTCTCCTTTACCAAGTTTTGTTTTACTATTTGATCGGATCGGATCGGATCTTGCTTTCGCCATTAATTACTCATGGAGATCCGTGCCGATGCAGATACCAGCTCCTTTTCAAGTTTGTTCGCAGCTGTGTCATATGGATTTACATCAATGGCCATGGTTTTTATCAACAAGGCTGTTCTTATGCAGTATGCATATTCAATGACTCTCCTCACTCTGCAGCAATTGGTTACCACCTTGCTTATTCACTTTGGTAGAAAGACGGGATACACGAAAGCAAGAGAACTGGATATGACAACGGCCAAGCGACTGCTCCCGCTCTCTATTTTCTATAATGCCAATGTTGCTTTTGCTTTGGCAAGTTTGAAAGGAGTCAATATCCCTATGTATATTGCAATCAAGAGGCTTACGCCACTTGCTGTACTCGTTGCTGGGTGTTTCTCTGGAAAAGGAAAACCTACAACTCAGGTGGCTCTTTCAGTGATATTGACTGCTGCTGGAGTTCTCATTGCTGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCCTTTGTTTCTGTTTTTTTCCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGTGCTGAGGATGGGCTTTCATCCTTGGAAATCATGTTCTATAACAGCTTTTTATCTCTTCCATTTTTGATGTTTCTCATCGTAGCCACTGGGGAATTCCCAAATTCTTTATCCGTATTATTTGCAAAGGAACTGCTAAAAGCCTCAGTGATAGTGTAGTTAATCCCAAACAGCAAATATGTTAGTTATGTACTCATTCATTTCCTTATGATTGTTATTCTCTTCTTCTAACTGATATTGTCTGCTAAGTAGTTTTGTGCAAATTTTCTATGTATTGGTCCATTGTAAAATATTAATCAGAATCTAGCAGATTCATTTCTTGCAAAACAATCATGACCTGGGGGATTTGTAGATAACTTTGAGATTGTTAGGATTGGGCATGTAACAAAAAATCAAGGAAAAAGAGCGTGGGGGTTGTACTTGTGAGGCTGAGATCACTTGATGTGTGGTAGAAAA

Coding sequences of Glyma06g08190

Limit To All Plant Sequences

>Glyma06g08190.1   sequence type=CDS   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCCGTGCCGATGCAGATACCAGCTCCTTTTCAAGTTTGTTCGCAGCTGTGTCATATGGATTTACATCAATGGCCATGGTTTTTATCAACAAGGCTGTTCTTATGCAGTATGCATATTCAATGACTCTCCTCACTCTGCAGCAATTGGTTACCACCTTGCTTATTCACTTTGGTAGAAAGACGGGATACACGAAAGCAAGAGAACTGGATATGACAACGGCCAAGCGACTGCTCCCGCTCTCTATTTTCTATAATGCCAATGTTGCTTTTGCTTTGGCAAGTTTGAAAGGAGTCAATATCCCTATGTATATTGCAATCAAGAGGCTTACGCCACTTGCTGTACTCGTTGCTGGGTGTTTCTCTGGAAAAGGAAAACCTACAACTCAGGTGGCTCTTTCAGTGATATTGACTGCTGCTGGAGTTCTCATTGCTGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCCTTTGTTTCTGTTTTTTTCCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGTGCTGAGGATGGGCTTTCATCCTTGGAAATCATGTTCTATAACAGCTTTTTATCTCTTCCATTTTTGATGTTTCTCATCGTAGCCACTGGGGAATTCCCAAATTCTTTATCCGTATTATTTGCAAAGAGTTATTCTTTCTCATTTTTGGTGATCCTGATTCTTTCATTGGTGATGGGCATCATTCTCAACTTCACCATGTTCTTGTGTACAATTGTTAATTCAGCCTTAACTACAACTATTGTTGGCGTTCTCAAAGGGGTTGTTTCCACGACCTTTGGTTTCTTCTTACTGGGTGGTGTTCAAGTCCATGCTTTGAATGTGAGTGGATTGGTTATCAATACAGCTGGTGGTGTGTGGTATTCATATGCTAAATATCACCAGAGAAAAAGTAAGGCGGTGAAGCTAGTACCAGATGTGGAGGCTCATCGTAAATAG

>Glyma06g08190.2   sequence type=CDS   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCCGTGCCGATGCAGATACCAGCTCCTTTTCAAGTTTGTTCGCAGCTGTGTCATATGGATTTACATCAATGGCCATGGTTTTTATCAACAAGGCTGTTCTTATGCAGTATGCATATTCAATGACTCTCCTCACTCTGCAGCAATTGGTTACCACCTTGCTTATTCACTTTGGTAGAAAGACGGGATACACGAAAGCAAGAGAACTGGATATGACAACGGCCAAGCGACTGCTCCCGCTCTCTATTTTCTATAATGCCAATGTTGCTTTTGCTTTGGCAAGTTTGAAAGGAGTCAATATCCCTATGTATATTGCAATCAAGAGGCTTACGCCACTTGCTGTACTCGTTGCTGGGTGTTTCTCTGGAAAAGGAAAACCTACAACTCAGGTGGCTCTTTCAGTGATATTGACTGCTGCTGGAGTTCTCATTGCTGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCCTTTGTTTCTGTTTTTTTCCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGTGCTGAGGATGGGCTTTCATCCTTGGAAATCATGTTCTATAACAGCTTTTTATCTCTTCCATTTTTGATGTTTCTCATCGTAGCCACTGGGGAATTCCCAAATTCTTTATCCGTATTATTTGCAAAGAGTTATTCTTTCTCATTTTTGGTGATCCTGATTCTTTCATTGGTGATGGGCATCATTCTCAACTTCACCATGTTCTTGTGTACAATTGTTAATTCAGCCTTAACTACAACTATTGTTGGCGTTCTCAAAGGGGTTGTTTCCACGACCTTTGGTTTCTTCTTACTGGGTGGTGTTCAAGTCCATGCTTTGAATGTGAGTGGATTGGTTATCAATACAGCTGGTGGTGTGTGGTATTCATATGCTAAATATCACCAGAGAAAAAGTAAGGCGGTGAAGCTAGTACCAGATGTGGAGGCTCATCGTAAATAG

>Glyma06g08190.3   sequence type=CDS   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCCGTGCCGATGCAGATACCAGCTCCTTTTCAAGTTTGTTCGCAGCTGTGTCATATGGATTTACATCAATGGCCATGGTTTTTATCAACAAGGCTGTTCTTATGCAGTATGCATATTCAATGACTCTCCTCACTCTGCAGCAATTGGTTACCACCTTGCTTATTCACTTTGGTAGAAAGACGGGATACACGAAAGCAAGAGAACTGGATATGACAACGGCCAAGCGACTGCTCCCGCTCTCTATTTTCTATAATGCCAATGTTGCTTTTGCTTTGGCAAGTTTGAAAGGAGTCAATATCCCTATGTATATTGCAATCAAGAGGCTTACGCCACTTGCTGTACTCGTTGCTGGGTGTTTCTCTGGAAAAGGAAAACCTACAACTCAGGTGGCTCTTTCAGTGATATTGACTGCTGCTGGAGTTCTCATTGCTGCCCTTGGAGATTTTTCCTTTGACCTTTTTGGGTATAGCATGGCCTTTGTTTCTGTTTTTTTCCAGACCATGTACCTTGTGCTGGTGGAAAAATCTGGTGCTGAGGATGGGCTTTCATCCTTGGAAATCATGTTCTATAACAGCTTTTTATCTCTTCCATTTTTGATGTTTCTCATCGTAGCCACTGGGGAATTCCCAAATTCTTTATCCGTATTATTTGCAAAGGAACTGCTAAAAGCCTCAGTGATAGTGTAG

Predicted protein sequences of Glyma06g08190

Limit To All Plant Sequences

>Glyma06g08190.1   sequence type=predicted peptide   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIRADADTSSFSSLFAAVSYGFTSMAMVFINKAVLMQYAYSMTLLTLQQLVTTLLIHFGRKTGYTKARELDMTTAKRLLPLSIFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGCFSGKGKPTTQVALSVILTAAGVLIAALGDFSFDLFGYSMAFVSVFFQTMYLVLVEKSGAEDGLSSLEIMFYNSFLSLPFLMFLIVATGEFPNSLSVLFAKSYSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVVSTTFGFFLLGGVQVHALNVSGLVINTAGGVWYSYAKYHQRKSKAVKLVPDVEAHRK*

>Glyma06g08190.2   sequence type=predicted peptide   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIRADADTSSFSSLFAAVSYGFTSMAMVFINKAVLMQYAYSMTLLTLQQLVTTLLIHFGRKTGYTKARELDMTTAKRLLPLSIFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGCFSGKGKPTTQVALSVILTAAGVLIAALGDFSFDLFGYSMAFVSVFFQTMYLVLVEKSGAEDGLSSLEIMFYNSFLSLPFLMFLIVATGEFPNSLSVLFAKSYSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVVSTTFGFFLLGGVQVHALNVSGLVINTAGGVWYSYAKYHQRKSKAVKLVPDVEAHRK*

>Glyma06g08190.3   sequence type=predicted peptide   gene model=Glyma06g08190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIRADADTSSFSSLFAAVSYGFTSMAMVFINKAVLMQYAYSMTLLTLQQLVTTLLIHFGRKTGYTKARELDMTTAKRLLPLSIFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGCFSGKGKPTTQVALSVILTAAGVLIAALGDFSFDLFGYSMAFVSVFFQTMYLVLVEKSGAEDGLSSLEIMFYNSFLSLPFLMFLIVATGEFPNSLSVLFAKELLKASVIV*

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