Glyma06g08110 - SoyBase

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Report for Sequence Feature Glyma06g08110

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5969231
stop:	5973832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G14870	AT	Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 18 \| chr5:4808268-4810897 REVERSE LENGTH=706	SoyBase	E_val: 0	ISS
GO:0006874	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF7	Panther	POTASSIUM CHANNEL PROTEIN EAG-RELATED	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
UniRef100_D7M6N7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated ion channel 18 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M6N7_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A18D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A18D related cluster n=1 Tax=unknown RepID=UPI000233A18D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g08110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g077300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g08110

Limit To All Plant Sequences

>Glyma06g08110.1   sequence type=CDS   gene model=Glyma06g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAGAATATTATCGACGCCGGCGTCGAAGTTCCGCCAGTTCCGGCGACTCCGGTCTCGACCGAAGGCAGCGACAGCGACAGCGACAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGTTACCAGATCCTGGACCCCGACAGCGACATCGTGGCCTATTGGAACCGGGTGTTCCTTGTTACGAGCCTCCTCGCCCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTTGGCGGCCCCGCCTGCCTCCAGGCTGATCCCAAACTCAGCATCCTCGTTACCATCCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGATCATGAAGTTTCGCACCGCCTTCGTCGCCCCCAACTCTCGAATCTTCGGCCGCGGCGAGCTCGTCATGGACGCCCGCGAAATCGCCATGCGCTACTTGAAGTCTGATTTCGTCATTGACCTTGCTGCCACCATCCCTCTCCCCCAGATTGTTATTTGGTTGGTGATTCCTGCCAGTAGAAACGCAAGAACTGACCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGAGTTATCGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCGACTTGGTATCTATCATCAATAGGGAGGCAATTTAGCTGCTGGAAAACGCAGTGCCAACTGGAGAACAAATCCCATACCCTCTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGACAATACTGGCTAAACATCACCCATGTAATCAGCAGATGTGACGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGTATGTTCGCAGATGCTTTCCTCAATGATGTTGTCACTTCCAGTTTCAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTCTGCATCGTCTTATGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGTCATCAATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAGGATTTGCAGGAACGTGTCCGTCGTTTTGCTCAATACAAATGGCTTGCAACAAGAGGAGTCAATGAAGAAGCCATACTTCTTTCACTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGCCGTGTACCCTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGGCTTGCGTCATCACTGAGCACCGAAGGAACCTACCTATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTTATCATTAGAGGTCAATTGGAGAGCTCCACAACCAACGGAGGAAGGTCTGGATTCTTCAATTCCATCTCACTCCGGCCTGGTGACTTTTGTGGGGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAAACCTCAACCTACCTTCTTCTACACGCACAGTCAAAGCACTTACTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATCTGTGGCAAGTCAGTTCAAGCGTCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCTTGCTTCATACAAGCTGCTTGGAGACGGCATCAGAAGAGAAAAGCAACAAGGGAGTTATCCCTCAAAGAGGGTCTCTACTACCTGGCATTGTCTGAGGCTGAGAGGGATGGAAGTGGAAATTATGAGATCGAGGAATCCTCAGGGAGTGTGAAAAAGGTTCAGAATCTAGGTCCAACTGTTTTTGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGAAACCATAAGCTACAAGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTCTAGACCACGAACAAGTTTAG

Predicted protein sequences of Glyma06g08110

Limit To All Plant Sequences

>Glyma06g08110.1   sequence type=predicted peptide   gene model=Glyma06g08110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRILSTPASKFRQFRRLRSRPKAATATATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLQADPKLSILVTILRSFADLFYVLHMIMKFRTAFVAPNSRIFGRGELVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFSCWKTQCQLENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVISRCDAKSKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMQTYLSSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFAQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYLFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSISLRPGDFCGEELLTWALMPNSNLNLPSSTRTVKALTEVEAFALQAEDLKSVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRHQKRKATRELSLKEGLYYLALSEAERDGSGNYEIEESSGSVKKVQNLGPTVFASKFAANTKKGNHKLQDPVPQLFKPDEPDFSLDHEQV*

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