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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14870 | AT | Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 18 | chr5:4808268-4810897 REVERSE LENGTH=706 | SoyBase | E_val: 0 | ISS |
| GO:0006874 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0048610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction | SoyBase | N/A | ISS |
| GO:0048868 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016324 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| KOG0498 | KOG | K+-channel ERG and related proteins, contain PAS/PAC sensor domain | JGI | ISS | |
| PTHR10217 | Panther | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL | JGI | ISS | |
| PTHR10217:SF7 | Panther | POTASSIUM CHANNEL PROTEIN EAG-RELATED | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF00520 | PFAM | Ion transport protein | JGI | ISS | |
| UniRef100_D7M6N7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated ion channel 18 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M6N7_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A18D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A18D related cluster n=1 Tax=unknown RepID=UPI000233A18D | SoyBase | E_val: 0 | ISS |
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Glyma06g08110 not represented in the dataset |
Glyma06g08110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g077300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g08110.1 sequence type=CDS gene model=Glyma06g08110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATAGAATATTATCGACGCCGGCGTCGAAGTTCCGCCAGTTCCGGCGACTCCGGTCTCGACCGAAGGCAGCGACAGCGACAGCGACAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGTTACCAGATCCTGGACCCCGACAGCGACATCGTGGCCTATTGGAACCGGGTGTTCCTTGTTACGAGCCTCCTCGCCCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTTGGCGGCCCCGCCTGCCTCCAGGCTGATCCCAAACTCAGCATCCTCGTTACCATCCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGATCATGAAGTTTCGCACCGCCTTCGTCGCCCCCAACTCTCGAATCTTCGGCCGCGGCGAGCTCGTCATGGACGCCCGCGAAATCGCCATGCGCTACTTGAAGTCTGATTTCGTCATTGACCTTGCTGCCACCATCCCTCTCCCCCAGATTGTTATTTGGTTGGTGATTCCTGCCAGTAGAAACGCAAGAACTGACCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGAGTTATCGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCGACTTGGTATCTATCATCAATAGGGAGGCAATTTAGCTGCTGGAAAACGCAGTGCCAACTGGAGAACAAATCCCATACCCTCTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGACAATACTGGCTAAACATCACCCATGTAATCAGCAGATGTGACGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGTATGTTCGCAGATGCTTTCCTCAATGATGTTGTCACTTCCAGTTTCAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTCTGCATCGTCTTATGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGTCATCAATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAGGATTTGCAGGAACGTGTCCGTCGTTTTGCTCAATACAAATGGCTTGCAACAAGAGGAGTCAATGAAGAAGCCATACTTCTTTCACTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGCCGTGTACCCTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGGCTTGCGTCATCACTGAGCACCGAAGGAACCTACCTATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTTATCATTAGAGGTCAATTGGAGAGCTCCACAACCAACGGAGGAAGGTCTGGATTCTTCAATTCCATCTCACTCCGGCCTGGTGACTTTTGTGGGGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAAACCTCAACCTACCTTCTTCTACACGCACAGTCAAAGCACTTACTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATCTGTGGCAAGTCAGTTCAAGCGTCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCTTGCTTCATACAAGCTGCTTGGAGACGGCATCAGAAGAGAAAAGCAACAAGGGAGTTATCCCTCAAAGAGGGTCTCTACTACCTGGCATTGTCTGAGGCTGAGAGGGATGGAAGTGGAAATTATGAGATCGAGGAATCCTCAGGGAGTGTGAAAAAGGTTCAGAATCTAGGTCCAACTGTTTTTGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGAAACCATAAGCTACAAGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTCTAGACCACGAACAAGTTTAG
>Glyma06g08110.1 sequence type=predicted peptide gene model=Glyma06g08110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYRILSTPASKFRQFRRLRSRPKAATATATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLQADPKLSILVTILRSFADLFYVLHMIMKFRTAFVAPNSRIFGRGELVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFSCWKTQCQLENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVISRCDAKSKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMQTYLSSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFAQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYLFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSISLRPGDFCGEELLTWALMPNSNLNLPSSTRTVKALTEVEAFALQAEDLKSVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRHQKRKATRELSLKEGLYYLALSEAERDGSGNYEIEESSGSVKKVQNLGPTVFASKFAANTKKGNHKLQDPVPQLFKPDEPDFSLDHEQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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