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Report for Sequence Feature Glyma06g08080

Feature Type:gene_model
Chromosome:Gm06
Start:5947983
stop:5951666
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10700AT Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase II (PTH2) family protein | chr5:3378053-3378867 REVERSE LENGTH=200 SoyBaseE_val: 8.00E-68ISS
GO:0006470GO-bp Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation SoyBaseN/AISS
GO:0004045GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity SoyBaseN/AISS
GO:0004725GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity SoyBaseN/AISS
KOG3305 KOG Uncharacterized conserved protein JGI ISS
PTHR11717Panther LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE JGI ISS
PTHR11717:SF2Panther PHOSPHOTYROSINE PROTEIN PHOSPHATASE JGI ISS
PF01981PFAM Peptidyl-tRNA hydrolase PTH2 JGI ISS
UniRef100_D7M2Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein tyrosine phosphatase (Fragment) n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M2Z8_ARALL SoyBaseE_val: 1.00E-65ISS
UniRef100_I1K946UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K946_SOYBN SoyBaseE_val: 1.00E-119ISS

Expression Patterns of Glyma06g08080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08080
ParalogEvidenceComments
Glyma04g08040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g077100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08080
>Glyma06g08080.1   sequence type=CDS   gene model=Glyma06g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGCTAGTGTAGGTGTGAGCTTATCAATGGCCTGCGGCATTCCATTACGTCTCTCCGCTTTCCCAAGCACCACAATTAGGGCTACACTTCCCCATTTACACGCGCCTTCTATCTCCAGCCGCCCGAGTCCTCTCAGCTCCAACTCAATGAGTCAACCCGCCACAACGAATCACGCGGATGTTGTAGTGCAGTACGTGGTGCTCCGCCGAGACCTTATCGACACGTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGCCACGCTTCTGTTTCCGCCGTTTGGTTCAACAAAGACGATCCTTTCACCGTCGATTATTGCAGCCCCGATAAAATTGATTCTATGCACAAAGTTACACTTGAAGTAAAGGGGGAACCCCAGATCAAAAACTTGTCTGAGAAACTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCAACAAAACCTTACCCCAAGTCAATCGTGTCTTCATATTTTAAGAAGTTGAAACTATGTAAGTGA
Predicted protein sequences of Glyma06g08080
>Glyma06g08080.1   sequence type=predicted peptide   gene model=Glyma06g08080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASVGVSLSMACGIPLRLSAFPSTTIRATLPHLHAPSISSRPSPLSSNSMSQPATTNHADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWFNKDDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSIVSSYFKKLKLCK*






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