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Report for Sequence Feature Glyma06g08070

Feature Type:gene_model
Chromosome:Gm06
Start:5945540
stop:5945935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g08070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10695AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3377817-3378020 FORWARD LENGTH=67 SoyBaseE_val: 1.00E-20ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
UniRef100_I1K945UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K945_SOYBN SoyBaseE_val: 1.00E-38ISS

Expression Patterns of Glyma06g08070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08070
ParalogEvidenceComments
Glyma04g08020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g077000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g08070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g08070
>Glyma06g08070.2   sequence type=CDS   gene model=Glyma06g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATACGCGTGGCAAAATATGTGTTTGGTGTTTGTGTGCGGGTGGTGTCAAGGCAGCCAGCACCAGGAGCGTGTCCTTACTGTGGAGGGATGATCCAGGCTATGGACTTTGAGAGCCAATGGAGTTTCTGTTTCCTTCCTTTGTACTCTAAGACCAAGCGCAGGCATTACTGCACCATGTGCACCAGAAAACTCGTCCTTCAGTAA
Predicted protein sequences of Glyma06g08070
>Glyma06g08070.2   sequence type=predicted peptide   gene model=Glyma06g08070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIRVAKYVFGVCVRVVSRQPAPGACPYCGGMIQAMDFESQWSFCFLPLYSKTKRRHYCTMCTRKLVLQ*






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