Glyma06g08030 - SoyBase

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Report for Sequence Feature Glyma06g08030

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5916606
stop:	5921312
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24870	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:8545008-8546923 REVERSE LENGTH=520	SoyBase	E_val: 5.00E-119	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_B9RNL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RNL9_RICCO	SoyBase	E_val: 1.00E-176	ISS
UniRef100_I1K941	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K941_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g08030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08030

Paralog	Evidence	Comments
Glyma04g07980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g076600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08030

Limit To All Plant Sequences

>Glyma06g08030.2   sequence type=transcript   gene model=Glyma06g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTCCCATTCCTTTCTTGGCAGCAAGGTTCTTTGAGTGTGACACTACATTAAATCCAGGCCCTCCATTATCCTCATTACCGATCAACGGTCGAGATCTCCTCCCTCTGGCTTTTCAATTAGGACGGCGCCACTATGGTTCCGCTCCTCAAACCATAAAAATAAGATTATTATTATAAAAGAGCTTCATTGGATTAGAGGACTGAACTTTGCTTCTCTCTCTCTTCTACGTCTCCTTCCTCTCAAACGGAAAACAACCGCAACAGCAGATTTGAAGGGAGTACGCAATTGATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCTTGCATTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGCAGCAGAGTCAATACTCCTAAAGGCACTCAAATTGGTTCTTGTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATGTTCCAAGACTAGTAGCCCTGGAAAACCACCTGTAAAGCCTCGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGATTCAGAAGCTTCAAAACTCACCTCTCCCCCTCAAAAAAGTCAGACAGGGGGTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGTAATGATGGAGGTAGGAAGCTCTAGTATAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAATTCTGGATTACGTGGCCAAGAAATTAAAAGCTCTGGTTCAGTGACTCGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTACTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGGAATTCTGGCCCCAGAAATGGCATATCTATCTCTGATACAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGCCACCTAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCGTTCTGGTGGTCTTAATATTCCAGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGCAGACCAGGTACTGGCAATGAGGAGTTATACGGTGTTATGCCTGTGTCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATTGATAGTATTGCAGAGGTATTGGTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGACTGAACTTGTATGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGTTTGTTAACGTCATAAGGTGCTACAATTCCGTTTGTTATAATTGTTTGCTTGTTTACTTCTTTTTCTGATAATATCTACTGTGTTTTGATAGTTCTGTGATTATTATGAAAACATTCTTAAGAATACATGCTATTAAAACAATGTGGAGGATTATAATGTAATTTTTAAGTGCTGTTTATTGGTACTACCCTGCTTCAACTTTTGAGGGAGTGGTTTGAATTTAAGCTGAGTTGCAGGAGATGGCTTTTAGTGTAAAATTTATTTTTCCAACTATTCTCACCTCCCAGAATTTTCTTTAAATGACAGCAATTGCTGGCTTTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTATCAGAATGCCTAAAGAAAAGTGTCTACCAGTCCTCACCCTCTGACAATGAAGCTGAGAGTTGCAATGAACCTAAGGATGATACAAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGAAGAAGTGGGGAGTTTGCAATGCGAGCACATGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAATTCATCACCATCCTAATGATCCCATCAATTGCAATGTTAGGCCAGACGAGGGAGACTGATTTCTTTGTACCCCTCTTGCTGTTCATTTTTTTCTTCATCACTTTTGTACAAAATACAGTTGCTCCTCACTTATTTTTATTGGTCATTTGTACATAGCCAATATTTTCATTCCCATTATACAATAATCCAAGCCATTGGCCTGATATAGACTGGAACTTCTTGATAATCTGCTGGTGCAATGTCTTACAGCCTTCCTCTTATGTTCCTTTTTTCTTTAATCCATACATAAAGCACTAAGGAATTAGGAAGGAAAAGTAAAGTGTAGGCAAGGAAGTTTTTTTATTTTTATTTTTATTACGATTAAAGTGTTTGACAACTTTTTAAAACC

Coding sequences of Glyma06g08030

Limit To All Plant Sequences

>Glyma06g08030.1   sequence type=CDS   gene model=Glyma06g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCTTGCATTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGCAGCAGAGTCAATACTCCTAAAGGCACTCAAATTGGTTCTTGTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATGTTCCAAGACTAGTAGCCCTGGAAAACCACCTGTAAAGCCTCGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGATTCAGAAGCTTCAAAACTCACCTCTCCCCCTCAAAAAAGTCAGACAGGGGGTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGTAATGATGGAGGTAGGAAGCTCTAGTATAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAATTCTGGATTACGTGGCCAAGAAATTAAAAGCTCTGGTTCAGTGACTCGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTACTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGGAATTCTGGCCCCAGAAATGGCATATCTATCTCTGATACAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGCCACCTAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCGTTCTGGTGGTCTTAATATTCCAGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGCAGACCAGGTACTGGCAATGAGGAGTTATACGGTGTTATGCCTGTGTCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATTGATAGTATTGCAGAGGTATTGGTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGACTGAACTTGTATGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAATTGCTGGCTTTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTATCAGAATGCCTAAAGAAAAGTGTCTACCAGTCCTCACCCTCTGACAATGAAGCTGAGAGTTGCAATGAACCTAAGGATGATACAAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGAAGAAGTGGGGAGTTTGCAATGCGAGCACATGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAATTCATCACCATCCTAA

>Glyma06g08030.2   sequence type=CDS   gene model=Glyma06g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCTTGCATTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGCAGCAGAGTCAATACTCCTAAAGGCACTCAAATTGGTTCTTGTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATGTTCCAAGACTAGTAGCCCTGGAAAACCACCTGTAAAGCCTCGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGATTCAGAAGCTTCAAAACTCACCTCTCCCCCTCAAAAAAGTCAGACAGGGGGTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGTAATGATGGAGGTAGGAAGCTCTAGTATAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAATTCTGGATTACGTGGCCAAGAAATTAAAAGCTCTGGTTCAGTGACTCGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTACTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGGAATTCTGGCCCCAGAAATGGCATATCTATCTCTGATACAAGAATATCTAGGAATACTCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGCCACCTAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCGTTCTGGTGGTCTTAATATTCCAGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGCAGACCAGGTACTGGCAATGAGGAGTTATACGGTGTTATGCCTGTGTCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATTGATAGTATTGCAGAGGTATTGGTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGACTGAACTTGTATGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGTTTGTTAA

Predicted protein sequences of Glyma06g08030

Limit To All Plant Sequences

>Glyma06g08030.1   sequence type=predicted peptide   gene model=Glyma06g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGYSGKRAIDGVVVPRKGMGLAFRDTANARDRNGQVCSRITCSSRVNTPKGTQIGSCEKGKSLKPSIQSSSAGKEAIGSSSRTCSKTSSPGKPPVKPRKSPSSQLETDSSETSSVQDDSEASKLTSPPQKSQTGGQAELENTVSGNVMMEVGSSSIVSNTRSRRNFHPNSGLRGQEIKSSGSVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRRKDVIKKRNCEGEGSSTTRGKKMSGSSLEARNSGPRNGISISDTRISRNTPHRDRSDSNMAPVRTRKLISGHTRGRLSSQGNANPVPPNESLVMIPSLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPGTGNEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNIDSIAEVLVALERIEQDVELTHEQIRLLESNLFLTGLNLYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSVYQSSPSDNEAESCNEPKDDTKCSICQEEYVAAEEVGSLQCEHMYHVACIQQWLQLKNWCPICKASVAQSNSSPS*

>Glyma06g08030.2   sequence type=predicted peptide   gene model=Glyma06g08030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGYSGKRAIDGVVVPRKGMGLAFRDTANARDRNGQVCSRITCSSRVNTPKGTQIGSCEKGKSLKPSIQSSSAGKEAIGSSSRTCSKTSSPGKPPVKPRKSPSSQLETDSSETSSVQDDSEASKLTSPPQKSQTGGQAELENTVSGNVMMEVGSSSIVSNTRSRRNFHPNSGLRGQEIKSSGSVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRRKDVIKKRNCEGEGSSTTRGKKMSGSSLEARNSGPRNGISISDTRISRNTPHRDRSDSNMAPVRTRKLISGHTRGRLSSQGNANPVPPNESLVMIPSLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPGTGNEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNIDSIAEVLVALERIEQDVELTHEQIRLLESNLFLTGLNLYDPHRDMRLDIDNMSYEVC*

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