Glyma06g08010 - SoyBase

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Report for Sequence Feature Glyma06g08010

Feature Type:	gene_model
Chromosome:	Gm06
Start:	5899649
stop:	5906576
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g08010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10710	AT	Annotation by Michelle Graham. TAIR10: INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:3379619-3382648 FORWARD LENGTH=312	SoyBase	E_val: 7.00E-145	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0007059	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromosome segregation	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0000775	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF09496	PFAM	Cenp-O kinetochore centromere component	JGI		ISS
UniRef100_I1K938	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K938_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q01LX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0145C02.4 protein n=3 Tax=Oryza sativa RepID=Q01LX6_ORYSA	SoyBase	E_val: 9.00E-145	ISS

Expression Patterns of Glyma06g08010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g08010

Paralog	Evidence	Comments
Glyma04g07960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g08010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g076400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g08010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g08010

Limit To All Plant Sequences

>Glyma06g08010.2   sequence type=transcript   gene model=Glyma06g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGGGTCAGCACTACGCACACTTTTACACCAATTGCATTGGAAGAATGCATCACCGCGTTGTGTTGTGATTGAAAATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTAGATTGCCCATGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGGTCGAATTTGTATTAGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGAGTAGGAAGGAAGATGGACTCTCGGGAAGTCATTCTTCCCCAATTCGCCTAACATATGCAGAAGATGCCTTACGAACCATGAGTTTACCCGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGATTCGGCAGACGTATCATCAAAAAGCCACCGCTTAGAGCTTTGCCCTTTCAGTAGCCTAGATGCATCTGTAAAAATTCTTGGTAGAGATGTTAAATATTAGAAAAACAACTTCAGAATTATTACCTATTTACCTAGTCAAATTGCTCAGGTTGAGTTCATTTTGCTGTAATATTGTCATATAGCATTTAGCATTTGTACTTCGGCCTCTCTGGCCTCGTTATTCCTTCAATACCTACTCCGGTGTCTTGTATCATTAATACAACAGGGCTAGGTTTACATCTATTCAAACTGCTGTCATTCATCTTTTCTTCATAATTCAATATGTATATAATTTGATTTCATATAAGTTCCATCTTTTTTACATGGCAAGCAAAAATGGCAAGTATGAAG

Coding sequences of Glyma06g08010

Limit To All Plant Sequences

>Glyma06g08010.1   sequence type=CDS   gene model=Glyma06g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAGAGAGCTGTATCATAGCCTTCCCTACCATATGGTCGAATTTGTATTAGATGATTCTGATTGCAAGGTGACAGTCAGCCTTAGATATGCAGATCTCATTTCGGTGCTTCCAACTCGAATTTCAGTGCTAGCCTGGCCTATGTTCAATAAAAATACTATGAGTAGGAAGGAAGATGGACTCTCGGGAAGTCATTCTTCCCCAATTCGCCTAACATATGCAGAAGATGCCTTACGAACCATGAGTTTACCCGAAGCATATGCAGAGATTGTATTAAACTTACCACAGGCGATTCGGCAGACGTATCATCAAAAAGCCACCGCTTAG

>Glyma06g08010.2   sequence type=CDS   gene model=Glyma06g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGCGATGTTGAAGAATCTATGCGGAAGAGGCCCAGAAAATATCCTTTCTCCGCCGATTCATCCTCTCGCAAGCAATTTGAACAATATTCTGGACGGACATTTGCAATTATGGGGGAAGTGAATTTTATGCAAGATGATGATAATCGTTTGGAGATTACCCGAACTAAATTTGGAAGTTTGCTTAAAAGACATGGAGATTTGACAGAGCGGCTTGCTAGGGATTCTGACAAGATAATATTTGAGCGTCTACAGAAGGAGTTTGAAGCTGCACGAGCTTCTCAAACTGAAGAGATATGTTTAGACGGGGAAGAGTGGAATGATGGTCTACTAGCTACAATAAGAGAGCGGGTGCATATGGAGGCGGACAGAAAAGCAATGCAAGGGGATGCGGACATATTAGCATGTCCCCTGGAAAAAATTACATATAAAATTGGAAACAAGGTAATTTGCTGTTTGGAAGGGGCAAGAATCGGCGTACAATATGAGACATCGTTTGCTGGTGAACCTTGTGAGTTTTACCATTGTGTGCTGGAAAGCAAGTCATTTCTTGAAAAGATGACTGTCCTTGAACACACAGTTCCATTTTTCCTGCCAATACGAGAAATAGAAAATGATCTCCATTCATCCAATGCAATGAAACTCATAGATCATGTTGGAGATCTATTGCAGGCTTTTGTGGATAGACGGGAACAGGTAGATTGCCCATGTCAGACTTATAAAGGAGCTGTATGGAAATCAGATTAG

Predicted protein sequences of Glyma06g08010

Limit To All Plant Sequences

>Glyma06g08010.1   sequence type=predicted peptide   gene model=Glyma06g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDVEESMRKRPRKYPFSADSSSRKQFEQYSGRTFAIMGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMQGDADILACPLEKITYKIGNKVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLHSSNAMKLIDHVGDLLQAFVDRREQVRLIKELYGNQIRELYHSLPYHMVEFVLDDSDCKVTVSLRYADLISVLPTRISVLAWPMFNKNTMSRKEDGLSGSHSSPIRLTYAEDALRTMSLPEAYAEIVLNLPQAIRQTYHQKATA*

>Glyma06g08010.2   sequence type=predicted peptide   gene model=Glyma06g08010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDVEESMRKRPRKYPFSADSSSRKQFEQYSGRTFAIMGEVNFMQDDDNRLEITRTKFGSLLKRHGDLTERLARDSDKIIFERLQKEFEAARASQTEEICLDGEEWNDGLLATIRERVHMEADRKAMQGDADILACPLEKITYKIGNKVICCLEGARIGVQYETSFAGEPCEFYHCVLESKSFLEKMTVLEHTVPFFLPIREIENDLHSSNAMKLIDHVGDLLQAFVDRREQVDCPCQTYKGAVWKSD*

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